chr10:123352317:A>G Detail (hg19) (FGFR2)

Information

Genome

Assembly Position
hg19 chr10:123,352,317-123,352,317
hg38 chr10:121,592,803-121,592,803 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_001144915.1:c.109+906T>C
NM_001144914.1:c.109+906T>C
NM_022970.3:c.109+906T>C
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.722
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance Benign
Review star
Show details
Links
Type Database ID Link
Gene MIM 176943 OMIM
HGNC 3689 HGNC
Ensembl ENSG00000066468 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv40910870 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Benign 2024-01-29 criteria provided, single submitter FGFR2-related craniosynostosis germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.080 breast carcinoma FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.006 breast carcinoma We focus on TNRC9 rs3803662, FGFR2 rs1219648 and rs2981582, MAP3K1 rs889312, and... BeFree 21475998 Detail
0.080 breast carcinoma In this study, we evaluated the associations among FGFR2 SNPs rs2981582, rs24209... BeFree 23225170 Detail
0.132 Malignant neoplasm of breast FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.080 breast carcinoma FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.360 Malignant neoplasm of breast In this study, we evaluated the associations among FGFR2 SNPs rs2981582, rs24209... BeFree 23225170 Detail
0.240 Malignant neoplasm of breast FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.166 Malignant neoplasm of breast We focus on TNRC9 rs3803662, FGFR2 rs1219648 and rs2981582, MAP3K1 rs889312, and... BeFree 21475998 Detail
0.080 breast carcinoma FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.240 Malignant neoplasm of breast FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breas... BeFree 19028704 Detail
0.003 ovarian carcinoma The aim of the study is to investigate the relevance of rs1056663 and rs2708861 ... BeFree 22926736 Detail
0.006 Malignant neoplasm of ovary The aim of the study is to investigate the relevance of rs1056663 and rs2708861 ... BeFree 22926736 Detail
0.002 ovarian carcinoma The aim of the study is to investigate the relevance of rs1056663 and rs2708861 ... BeFree 22926736 Detail
0.007 Malignant neoplasm of ovary The aim of the study is to investigate the relevance of rs1056663 and rs2708861 ... BeFree 22926736 Detail
0.162 Malignant neoplasm of breast Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.166 Malignant neoplasm of breast Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.031 breast carcinoma Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.010 breast carcinoma Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.004 breast carcinoma Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.006 breast carcinoma Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.170 Malignant neoplasm of breast Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
0.230 Malignant neoplasm of breast Six of the previously identified SNPs showed a statistically significant associa... BeFree 22867275 Detail
<0.001 breast carcinoma We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
0.132 Malignant neoplasm of breast We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
0.001 breast carcinoma We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
0.001 Malignant neoplasm of breast We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
0.003 breast carcinoma We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
0.123 Malignant neoplasm of breast We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... BeFree 21791674 Detail
<0.001 Malignant neoplasm of male breast By multivariate logistic regression models, we found a significant increased MBC... BeFree 23468243 Detail
<0.001 Carcinoma of male breast By multivariate logistic regression models, we found a significant increased MBC... BeFree 23468243 Detail
<0.001 Malignant neoplasm of male breast By multivariate logistic regression models, we found a significant increased MBC... BeFree 23468243 Detail
<0.001 Carcinoma of male breast By multivariate logistic regression models, we found a significant increased MBC... BeFree 23468243 Detail
0.230 Malignant neoplasm of breast Our findings show a suggestively stronger association between FGFR2 rs2981582 an... BeFree 23143756 Detail
0.240 Malignant neoplasm of breast Our findings show a suggestively stronger association between FGFR2 rs2981582 an... BeFree 23143756 Detail
0.031 breast carcinoma Our findings show a suggestively stronger association between FGFR2 rs2981582 an... BeFree 23143756 Detail
0.080 breast carcinoma Our findings show a suggestively stronger association between FGFR2 rs2981582 an... BeFree 23143756 Detail
0.121 Mammographic Density Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Rat... BeFree 23021931 Detail
0.080 breast carcinoma We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.360 Malignant neoplasm of breast We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.031 breast carcinoma We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.007 Malignant neoplasm of ovary We also noted a correlation between the number of minor alleles of rs2981582 in ... BeFree 17997823 Detail
0.230 Malignant neoplasm of breast Genome-wide association study identifies novel breast cancer susceptibility loci... GWASCAT 17529967 Detail
0.031 breast carcinoma We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.170 Malignant neoplasm of breast We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.230 Malignant neoplasm of breast We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.031 breast carcinoma Association between rs2981582 polymorphism in the FGFR2 gene and the risk of bre... BeFree 24054997 Detail
0.240 Malignant neoplasm of breast Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
0.010 breast carcinoma Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
<0.001 Mammographic Density Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Rat... BeFree 23021931 Detail
0.031 breast carcinoma We also noted a correlation between the number of minor alleles of rs2981582 in ... BeFree 17997823 Detail
0.237 Malignant neoplasm of breast We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.080 breast carcinoma We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.038 breast carcinoma We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.080 breast carcinoma We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.080 breast carcinoma Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
0.230 Malignant neoplasm of breast We also noted a correlation between the number of minor alleles of rs2981582 in ... BeFree 17997823 Detail
0.230 Malignant neoplasm of breast Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
0.230 Malignant neoplasm of breast Association between rs2981582 polymorphism in the FGFR2 gene and the risk of bre... BeFree 24054997 Detail
0.240 Malignant neoplasm of breast We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.010 breast carcinoma We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.480 Malignant neoplasm of breast We conducted a literature review to identify case-control studies of variants in... BeFree 20299982 Detail
0.170 Malignant neoplasm of breast Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
0.010 breast carcinoma A recent genome-wide association study has shown that common alleles at single n... BeFree 18355772 Detail
0.230 Malignant neoplasm of breast We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk... BeFree 21791674 Detail
0.031 breast carcinoma Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803... BeFree 20664043 Detail
0.003 ovarian carcinoma We also noted a correlation between the number of minor alleles of rs2981582 in ... BeFree 17997823 Detail
0.170 Malignant neoplasm of breast A recent genome-wide association study has shown that common alleles at single n... BeFree 18355772 Detail
0.006 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.131 Malignant neoplasm of breast We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.031 breast carcinoma We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.009 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.031 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.001 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.162 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.002 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.001 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.162 Malignant neoplasm of breast We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.002 breast carcinoma We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.004 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.170 Malignant neoplasm of breast We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.131 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.230 Malignant neoplasm of breast We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
<0.001 breast carcinoma We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.049 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.166 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.128 Malignant neoplasm of breast We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.090 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.004 breast carcinoma We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.019 breast carcinoma Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.230 Malignant neoplasm of breast Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... BeFree 22532573 Detail
0.010 breast carcinoma We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... BeFree 23893088 Detail
0.031 breast carcinoma Five SNPs associated with breast cancer risk predominantly among ER-positive tum... BeFree 22965832 Detail
0.080 breast carcinoma Five SNPs associated with breast cancer risk predominantly among ER-positive tum... BeFree 22965832 Detail
0.240 Malignant neoplasm of breast Five SNPs associated with breast cancer risk predominantly among ER-positive tum... BeFree 22965832 Detail
0.230 Malignant neoplasm of breast Five SNPs associated with breast cancer risk predominantly among ER-positive tum... BeFree 22965832 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000141.5(FGFR2):c.109+906T>C AND FGFR2-related craniosynostosis ClinVar Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
We focus on TNRC9 rs3803662, FGFR2 rs1219648 and rs2981582, MAP3K1 rs889312, and 2q35 rs13387042, to... DisGeNET Detail
In this study, we evaluated the associations among FGFR2 SNPs rs2981582, rs2420946, and rs1219648; a... DisGeNET Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
In this study, we evaluated the associations among FGFR2 SNPs rs2981582, rs2420946, and rs1219648; a... DisGeNET Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
We focus on TNRC9 rs3803662, FGFR2 rs1219648 and rs2981582, MAP3K1 rs889312, and 2q35 rs13387042, to... DisGeNET Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
FGFR2 rs1219648 and rs2981582 genotypes were significantly associated with breast cancer in EA only ... DisGeNET Detail
The aim of the study is to investigate the relevance of rs1056663 and rs2708861 HUS1 polymorphisms, ... DisGeNET Detail
The aim of the study is to investigate the relevance of rs1056663 and rs2708861 HUS1 polymorphisms, ... DisGeNET Detail
The aim of the study is to investigate the relevance of rs1056663 and rs2708861 HUS1 polymorphisms, ... DisGeNET Detail
The aim of the study is to investigate the relevance of rs1056663 and rs2708861 HUS1 polymorphisms, ... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
Six of the previously identified SNPs showed a statistically significant association with breast can... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... DisGeNET Detail
By multivariate logistic regression models, we found a significant increased MBC risk for 3 SNPs, in... DisGeNET Detail
By multivariate logistic regression models, we found a significant increased MBC risk for 3 SNPs, in... DisGeNET Detail
By multivariate logistic regression models, we found a significant increased MBC risk for 3 SNPs, in... DisGeNET Detail
By multivariate logistic regression models, we found a significant increased MBC risk for 3 SNPs, in... DisGeNET Detail
Our findings show a suggestively stronger association between FGFR2 rs2981582 and ER-positive breast... DisGeNET Detail
Our findings show a suggestively stronger association between FGFR2 rs2981582 and ER-positive breast... DisGeNET Detail
Our findings show a suggestively stronger association between FGFR2 rs2981582 and ER-positive breast... DisGeNET Detail
Our findings show a suggestively stronger association between FGFR2 rs2981582 and ER-positive breast... DisGeNET Detail
Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Ratio (OR)=1.13, 95% Co... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We also noted a correlation between the number of minor alleles of rs2981582 in FGFR2 and the averag... DisGeNET Detail
Genome-wide association study identifies novel breast cancer susceptibility loci. DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
Association between rs2981582 polymorphism in the FGFR2 gene and the risk of breast cancer in Mexica... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Ratio (OR)=1.13, 95% Co... DisGeNET Detail
We also noted a correlation between the number of minor alleles of rs2981582 in FGFR2 and the averag... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
We also noted a correlation between the number of minor alleles of rs2981582 in FGFR2 and the averag... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
Association between rs2981582 polymorphism in the FGFR2 gene and the risk of breast cancer in Mexica... DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
We conducted a literature review to identify case-control studies of variants in 4 genes known to af... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
A recent genome-wide association study has shown that common alleles at single nucleotide polymorphi... DisGeNET Detail
We also confirmed that SNPs in FGFR2 and TNRC9 were associated with greater risk of estrogen recepto... DisGeNET Detail
Odds ratios for breast cancer were greatest for FGFR2-rs2981582 and TNRC9-rs3803662 and, for these 2... DisGeNET Detail
We also noted a correlation between the number of minor alleles of rs2981582 in FGFR2 and the averag... DisGeNET Detail
A recent genome-wide association study has shown that common alleles at single nucleotide polymorphi... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... DisGeNET Detail
We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... DisGeNET Detail
Five SNPs associated with breast cancer risk predominantly among ER-positive tumors (rs2981582/FGFR2... DisGeNET Detail
Five SNPs associated with breast cancer risk predominantly among ER-positive tumors (rs2981582/FGFR2... DisGeNET Detail
Five SNPs associated with breast cancer risk predominantly among ER-positive tumors (rs2981582/FGFR2... DisGeNET Detail
Five SNPs associated with breast cancer risk predominantly among ER-positive tumors (rs2981582/FGFR2... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs2981582 dbSNP
Genome
hg19
Position
chr10:123,352,317-123,352,317
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs2981582
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.7218
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
12097
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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