chr1:186647506:G>A Detail (hg19) (PTGS2)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:186,647,506-186,647,506 |
| hg38 | chr1:186,678,374-186,678,374 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_000963.3:c.344C>T | NP_000954.1:p.Thr115Ile |
| Ensemble | ENST00000367468.10:c.344C>T | ENST00000367468.10:p.Thr115Ile |
| ENST00000680451.1:c.344C>T | ENST00000680451.1:p.Thr115Ile |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.094 | colorectal cancer | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
| 0.051 | colorectal carcinoma | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
| 0.003 | colorectal carcinoma | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
| 0.010 | colorectal cancer | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
| 0.030 | colorectal cancer | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
| 0.010 | colorectal carcinoma | We conducted a family-based case-control study to investigate the association be... | BeFree | 21618522 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
| We conducted a family-based case-control study to investigate the association between polymorphisms ... | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- Genome
- hg19
- Position
- chr1:186,647,506-186,647,506
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- East Asian Chromosome Counts (ExAC)
- 8646
- East Asian Allele Counts (ExAC)
- 0
- East Asian Heterozygous Counts (ExAC)
- 0
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 0.0
- Chromosome Counts in All Race (ExAC)
- 121238
- Allele Counts in All Race (ExAC)
- 1
- Heterozygous Counts in All Race (ExAC)
- 1
- Homozygous Counts in All Race (ExAC)
- 0
- Allele Frequency in All Race (ExAC)
- 8.248239000973292E-6
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