chr1:173309713:A>T Detail (hg19) (TNFSF4)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr1:173,309,713-173,309,713 |
hg38 | chr1:173,340,574-173,340,574 View the variant detail on this assembly version. |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | ||
Ensemble | ENST00000714471.1:c.-10+120619T>A | |
ENST00000714430.1:c.-127+83300T>A |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
0.121 | rheumatoid arthritis | A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic facto... | BeFree | 19714582 | Detail |
0.125 | rheumatoid arthritis | A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic facto... | BeFree | 19714582 | Detail |
0.120 | Lupus Erythematosus, Systemic | Genome-wide association scan in women with systemic lupus erythematosus identifi... | GWASCAT | 18204446 | Detail |
<0.001 | rheumatoid arthritis | A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic facto... | BeFree | 19714582 | Detail |
0.003 | rheumatoid arthritis | A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic facto... | BeFree | 19714582 | Detail |
0.148 | Lupus Erythematosus, Systemic | [Genome-wide association scan in women with systemic lupus erythematosus identif... | GAD | 18204446 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic factors, ITGAM (rs1143679... | DisGeNET | Detail |
A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic factors, ITGAM (rs1143679... | DisGeNET | Detail |
Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility va... | DisGeNET | Detail |
A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic factors, ITGAM (rs1143679... | DisGeNET | Detail |
A characteristic single-nucleotide polymorphism (SNP) in each of 9 genetic factors, ITGAM (rs1143679... | DisGeNET | Detail |
[Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility v... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs10798269 dbSNP
- Genome
- hg19
- Position
- chr1:173,309,713-173,309,713
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- T
Genome browser