chr1:159680868:C>T Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:159,680,868-159,680,868 |
| hg38 | chr1:159,711,078-159,711,078 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.903 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Chronic Obstructive Airway Disease | Haplotype analysis showed that the frequencies of the GC, GT haplotypes of rs224... | BeFree | 23267696 | Detail |
| 0.244 | Chronic Obstructive Airway Disease | Haplotype analysis showed that the frequencies of the GC, GT haplotypes of rs224... | BeFree | 23267696 | Detail |
| <0.001 | Kidney Diseases | Despite not finding an association with eGFR, our results support our previous s... | BeFree | 21569369 | Detail |
| 0.009 | Malignant neoplasm of lung | [Genome-wide association scan of tag SNPs identifies a susceptibility locus for ... | GAD | 18385676 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Haplotype analysis showed that the frequencies of the GC, GT haplotypes of rs2241718 (TGF-β1 gene), ... | DisGeNET | Detail |
| Haplotype analysis showed that the frequencies of the GC, GT haplotypes of rs2241718 (TGF-β1 gene), ... | DisGeNET | Detail |
| Despite not finding an association with eGFR, our results support our previous study demonstrating a... | DisGeNET | Detail |
| [Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs2808630 dbSNP
- Genome
- hg19
- Position
- chr1:159,680,868-159,680,868
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs2808630
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.903
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 15135
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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