chr12:102161827:C> Detail (hg19) (GNPTAB)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr12:102,161,827-102,161,827 |
| hg38 | chr12:101,768,049-101,768,049 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_024312.4:c.1396delG | NP_077288.2:p.Asp467IlefsTer33 |
| Ensemble | ENST00000299314.12:c.1396delG | ENST00000299314.12:p.Asp467IlefsTer33 |
| ENST00000549940.5:c.1396delG | ENST00000549940.5:p.Asp467IlefsTer8 |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance |
Pathogenic
|
| Review star |  |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
|
Pathogenic
|
2020-11-02 | no assertion criteria provided | Mucolipidosis type II |
germline
unknown
|
Detail |
|
Pathogenic
|
2023-12-26 | criteria provided, multiple submitters, no conflicts | Mucolipidosis type II,Pseudo-Hurler polydystrophy |
germline
unknown
|
Detail |
|
Pathogenic
|
2023-12-26 | criteria provided, multiple submitters, no conflicts | Mucolipidosis type II,Pseudo-Hurler polydystrophy |
germline
unknown
|
Detail |
|
Pathogenic
|
2020-09-14 | criteria provided, single submitter | mucolipidosis |
germline
|
Detail |
|
Pathogenic
|
2022-09-14 | criteria provided, single submitter | not provided |
germline
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.441 | MUCOLIPIDOSIS II ALPHA/BETA (disorder) | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_024312.5(GNPTAB):c.1399del (p.Asp467fs) AND Mucolipidosis type II | ClinVar | Detail |
| NM_024312.5(GNPTAB):c.1399del (p.Asp467fs) AND multiple conditions | ClinVar | Detail |
| NM_024312.5(GNPTAB):c.1399del (p.Asp467fs) AND multiple conditions | ClinVar | Detail |
| NM_024312.5(GNPTAB):c.1399del (p.Asp467fs) AND Mucolipidosis | ClinVar | Detail |
| NM_024312.5(GNPTAB):c.1399del (p.Asp467fs) AND not provided | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs397507448 dbSNP
- Genome
- hg19
- Position
- chr12:102,161,827-102,161,827
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- -
- East Asian Chromosome Counts (ExAC)
- 8636
- East Asian Allele Counts (ExAC)
- 0
- East Asian Heterozygous Counts (ExAC)
- 0
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 0.0
- Chromosome Counts in All Race (ExAC)
- 121310
- Allele Counts in All Race (ExAC)
- 3
- Heterozygous Counts in All Race (ExAC)
- 3
- Homozygous Counts in All Race (ExAC)
- 0
- Allele Frequency in All Race (ExAC)
- 2.4730030500370952E-5
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