ENST00000397545.9 CCDC40

Information
Transcript ID
ENST00000397545.9
Genome
hg38
Position
chr17:80,036,642-80,100,613
Strand
+
CDS length
3,429
Amino acid length
1,143
Gene symbol
CCDC40
Gene type
protein-coding
Gene description
coiled-coil domain 40 molecular ruler complex subunit
Gene Entrez Gene ID
55036
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 80,036,642 80,036,691
2 80,038,123 80,038,186
3 80,039,812 80,040,270
4 80,047,279 80,047,402
5 80,048,583 80,048,761
6 80,049,906 80,049,989
7 80,050,064 80,050,283
8 80,058,494 80,058,651
9 80,058,858 80,058,980
10 80,065,485 80,065,606
11 80,081,546 80,081,789
12 80,081,876 80,082,058
13 80,084,743 80,084,988
14 80,086,003 80,086,216
15 80,087,607 80,087,776
16 80,088,011 80,088,102
17 80,089,764 80,089,884
18 80,095,263 80,095,451
19 80,097,245 80,097,403
20 80,099,527 80,100,613
CDS
Exon number Type Start Stop
1 CDS 80,036,663 80,036,691
2 CDS 80,038,123 80,038,186
3 CDS 80,039,812 80,040,270
4 CDS 80,047,279 80,047,402
5 CDS 80,048,583 80,048,761
6 CDS 80,049,906 80,049,989
7 CDS 80,050,064 80,050,283
8 CDS 80,058,494 80,058,651
9 CDS 80,058,858 80,058,980
10 CDS 80,065,485 80,065,606
11 CDS 80,081,546 80,081,789
12 CDS 80,081,876 80,082,058
13 CDS 80,084,743 80,084,988
14 CDS 80,086,003 80,086,216
15 CDS 80,087,607 80,087,776
16 CDS 80,088,011 80,088,102
17 CDS 80,089,764 80,089,884
18 CDS 80,095,263 80,095,451
19 CDS 80,097,245 80,097,403
20 CDS 80,099,527 80,099,775
Other genome
Genome Chromosome Start End Links
hg19 chr17 78,010,441 78,074,412 Link
CDS sequence
ATGGCGGAACCGGGCGGCGCGGCGGGCCGGTCCCATCCGGAAGATGGATCGGCTTCTGAGGGAGAGAAGGAAGGGAATAATGAAAGCCACATGGTGTCACCACCAGAGAAGGATGATGGCCAGAAAGGTGAAGAAGCTGTCGGTAGCACAGAGCATCCTGAGGAAGTCACAACCCAAGCGGAAGCTGCAATTGAAGAGGGGGAGGTGGAGACAGAAGGGGAAGCAGCAGTGGAAGGGGAAGAGGAGGCTGTGTCCTATGGAGATGCTGAAAGCGAAGAGGAATATTACTATACAGAAACTTCATCCCCGGAAGGGCAAATCAGTGCTGCAGATACGACTTACCCGTATTTCAGTCCTCCTCAGGAACTGCCTGGAGAGGAGGCATACGATAGTGTTAGCGGGGAGGCTGGTCTCCAAGGCTTCCAGCAAGAGGCCACCGGTCCACCAGAATCCAGAGAAAGGAGGGTCACCTCCCCAGAGCCATCCCACGGAGTCTTAGGCCCGTCGGAGCAAATGGGCCAGGTCACCTCTGGGCCAGCAGTGGGCAGATTGACAGGATCCACAGAGGAGCCCCAGGGGCAGGTGCTCCCAATGGGCGTCCAGCACCGCTTCCGGCTGAGCCACGGGAGCGACATCGAGTCCTCAGACCTGGAGGAGTTCGTCTCGCAGGAGCCAGTGATCCCCCCAGGGGTGCCCGATGCCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAGATCCAGCAGCCCAGCACCGAGGAGGGGGCCATGGCAGAGAGAGTGGAGTCCGAGGGGAGTGACGAGGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACCCAGACCACCCCCTGATGGTAAGATTCCAGGCTGCCCTGAAGAACTACCTGAACCGACAGATCGAAAAGTTGAAGCTGGACCTCCAAGAGCTGGTTGTGGCTACCAAGCAGAGCCGAGCCCAGCGGCAGGAGCTGGGGGTGAATCTCTATGAGGTGCAGCAGCACCTGGTACACCTGCAGAAGCTGCTGGAGAAGAGTCACGACCGCCACGCAATGGCCTCGAGCGAGCGCAGGCAGAAGGAGGAGGAGCTGCAGGCCGCCCGCGCTCTCTACACCAAGACCTGCGCAGCCGCCAACGAGGAGCGCAAAAAGTTGGCGGCTCTGCAGACTGAGATGGAGAACTTGGCCCTGCATCTCTTCTACATGCAGAACATCGACCAGGACATGCGTGACGACATCCGCGTGATGACACAAGTGGTAAAGAAGGCCGAGACGGAGAGGATCCGGGCAGAAATCGAGAAGAAAAAGCAGGACCTGTATGTGGACCAGCTCACCACTCGAGCCCAGCAACTGGAAGAAGACATTGCCCTGTTTGAGGCTCAGTACTTGGCCCAAGCTGAGGACACCCGGATTTTAAGGAAAGCAGTGAGTGAGGCCTGCACCGAGATCGACGCCATCAGCGTGGAGAAGAGGCGCATCATGCAGCAATGGGCCAGCAGCCTGGTGGGCATGAAGCACCGCGACGAGGCGCACAGGGCGGTGCTGGAGGCGCTCAGAGGATGCCAGCATCAAGCCAAATCCACCGACGGCGAGATTGAGGCCTATAAGAAATCCATCATGAAGGAGGAAGAAAAGAACGAGAAGCTGGCGAGCATCCTGAACCGGACAGAGACGGAAGCCACACTGCTGCAGAAGCTCACCACCCAGTGCCTGACCAAGCAGGTGGCCCTGCAGAGCCAGTTCAATACCTACAGGCTCACCCTGCAGGACACAGAGGATGCCCTCAGCCAGGACCAGCTGGAACAAATGATACTCACGGAGGAGTTGCAGGCCATCCGCCAAGCCATCCAGGGCGAGCTGGAGCTCAGGAGGAAGACGGATGCTGCCATCCGGGAGAAGCTGCAGGAGCACATGACCTCCAACAAGACCACCAAATACTTCAACCAGCTCATCCTGAGGCTGCAGAAGGAGAAGACCAACATGATGACACATCTTTCCAAAATCAACGGTGACATTGCCCAGACCACCCTGGACATCACACACACCAGCAGCAGGCTGGACGCACACCAGAAGACCCTGGTGGAGCTGGACCAGGACGTGAAGAAAGTCAACGAGCTCATCACCAACAGCCAGAGCGAGATCTCCCGGCGCACGATCCTGATCGAGAGGAAGCAAGGGCTCATCAACTTCCTCAACAAGCAGCTGGAGCGGATGGTCTCCGAGCTGGGGGGGGAAGAAGTGGGGCCCCTGGAGCTTGAAATCAAAAGGCTGAGCAAGCTGATCGACGAGCACGATGGCAAGGCGGTCCAGGCCCAGGTGACCTGGCTGCGCCTGCAGCAGGAGATGGTCAAGGTGACACAGGAGCAGGAGGAGCAGCTGGCCTCCCTGGACGCATCCAAGAAGGAGCTCCACATCATGGAGCAGAAGAAACTACGAGTAGAAAGCAAGATTGAGCAGGAGAAGAAGGAGCAGAAGGAGATCGAGCACCACATGAAGGACCTGGACAACGACCTGAAGAAGCTCAACATGTTGATGAATAAAAACCGGTGCAGCTCGGAGGAGCTGGAGCAGAACAACCGGGTGACAGAGAATGAGTTCGTGCGCTCGCTGAAGGCCTCTGAGAGGGAGACCATCAAGATGCAGGACAAGCTGAACCAGCTCAGCGAGGAGAAGGCGACCCTCCTGAATCAACTGGTGGAAGCAGAACACCAGATTATGCTTTGGGAGAAAAAAATCCAACTGGCAAAAGAGATGCGTTCCTCAGTGGATTCCGAGATCGGCCAGACGGAGATCCGGGCCATGAAGGGCGAGATCCACAGGATGAAGGTCAGGCTCGGGCAGCTGCTGAAGCAGCAGGAGAAGATGATCCGTGCCATGGAGTTGGCGGTTGCCCGCAGAGAGACCGTCACCACCCAGGCCGAGGGGCAGCGCAAGATGGACAGGAAGGCGCTCACCCGCACCGACTTCCACCACAAGCAGCTTGAGCTGCGCCGGAAAATCAGGGACGTTCGCAAGGCCACCGATGAGTGCACCAAAACCGTCCTGGAACTGGAAGAAACACAAAGAAATGTGAGCAGCTCCCTCCTAGAGAAGCAGGAAAAGCTGTCGGTGATTCAGGCAGACTTCGACACACTCGAGGCCGACCTCACCCGGCTTGGGGCCCTCAAACGACAGAACCTTTCAGAGATCGTGGCCCTGCAGACACGCCTTAAGCACCTGCAGGCTGTGAAGGAGGGGCGCTACGTGTTCCTGTTCCGCTCCAAGCAGTCCCTAGTGCTGGAGCGCCAGCGCCTGGACAAGCGACTGGCTCTCATCGCCACCATCCTGGACCGCGTGCGGGACGAGTACCCCCAGTTCCAGGAGGCCCTGCACAAGGTCAGCCAGATGATCGCCAACAAGCTCGAGTCACCAGGGCCCTCCTAG
Amino sequence
MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGEEAVGSTEHPEEVTTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSSPEGQISAADTTYPYFSPPQELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPEPSHGVLGPSEQMGQVTSGPAVGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLEEFVSQEPVIPPGVPDAHPREGDLPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGSQLVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEVQQHLVHLQKLLEKSHDRHAMASSERRQKEEELQAARALYTKTCAAANEERKKLAALQTEMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQDLYVDQLTTRAQQLEEDIALFEAQYLAQAEDTRILRKAVSEACTEIDAISVEKRRIMQQWASSLVGMKHRDEAHRAVLEALRGCQHQAKSTDGEIEAYKKSIMKEEEKNEKLASILNRTETEATLLQKLTTQCLTKQVALQSQFNTYRLTLQDTEDALSQDQLEQMILTEELQAIRQAIQGELELRRKTDAAIREKLQEHMTSNKTTKYFNQLILRLQKEKTNMMTHLSKINGDIAQTTLDITHTSSRLDAHQKTLVELDQDVKKVNELITNSQSEISRRTILIERKQGLINFLNKQLERMVSELGGEEVGPLELEIKRLSKLIDEHDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASERETIKMQDKLNQLSEEKATLLNQLVEAEHQIMLWEKKIQLAKEMRSSVDSEIGQTEIRAMKGEIHRMKVRLGQLLKQQEKMIRAMELAVARRETVTTQAEGQRKMDRKALTRTDFHHKQLELRRKIRDVRKATDECTKTVLELEETQRNVSSSLLEKQEKLSVIQADFDTLEADLTRLGALKRQNLSEIVALQTRLKHLQAVKEGRYVFLFRSKQSLVLERQRLDKRLALIATILDRVRDEYPQFQEALHKVSQMIANKLESPGPS*