ENST00000389623.11 SSC5D

Information
Transcript ID
ENST00000389623.11
Genome
hg38
Position
chr19:55,488,436-55,519,099
Strand
+
CDS length
4,722
Amino acid length
1,574
Gene symbol
SSC5D
Gene type
protein-coding
Gene description
scavenger receptor cysteine rich family member with 5 domains
Gene Entrez Gene ID
284297
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 55,488,436 55,488,614
2 55,489,006 55,489,032
3 55,489,354 55,489,662
4 55,489,882 55,489,995
5 55,490,298 55,490,408
6 55,490,772 55,491,080
7 55,493,595 55,493,912
8 55,494,610 55,494,783
9 55,497,880 55,498,197
10 55,499,816 55,500,412
11 55,500,490 55,500,804
12 55,501,034 55,501,201
13 55,513,011 55,513,172
14 55,517,224 55,519,099
CDS
Exon number Type Start Stop
1 CDS 55,488,590 55,488,614
2 CDS 55,489,006 55,489,032
3 CDS 55,489,354 55,489,662
4 CDS 55,489,882 55,489,995
5 CDS 55,490,298 55,490,408
6 CDS 55,490,772 55,491,080
7 CDS 55,493,595 55,493,912
8 CDS 55,494,610 55,494,783
9 CDS 55,497,880 55,498,197
10 CDS 55,499,816 55,500,412
11 CDS 55,500,490 55,500,804
12 CDS 55,501,034 55,501,201
13 CDS 55,513,011 55,513,172
14 CDS 55,517,224 55,518,998
Other genome
Genome Chromosome Start End Links
hg19 chr19 55,999,803 56,030,466 Link
CDS sequence
ATGAGGGTCTTGGCCTGCCTCCTTGCGGCCCTGGTGGGGATCCAGGCTGTTGAGCGCCTGCGCCTGGCCGATGGCCCCCATGGGTGCGCTGGCCGCCTGGAGGTCTGGCATGGCGGGCGCTGGGGCACCGTGTGTGATGACGGCTGGGACCTGCGCGATGCCGCCGTGGCCTGCCGGCAGCTGGGCTGCGGAGGGGCACTGGCCGCCCCGGGAGGCGCCTTCTTCGGGGAGGGGGCAGGGCCTGTGTGGCTCAGCGAGCTGGCTTGCCGGGGCAACGAGGGGCAGCTGGGCCTCTGCCACCACCGGGGCTGGAAGGCCCACATCTGCTCCCACGAGGAGGACGCGGGCGTCGTCTGCGCAGGTCAGCGTGTGGCTAACTCCAGGGACGACTCAACATCTCCCCTGGATGGGGCTCCCTGGCCAGGGCTGTTGCTGGAGCTGAGCCCCAGCACGGAGGAGCCCCTGGTGACACATGCCCCCCGCCCAGCTGGGAACCCCCAGAACGCCTCCCGGAAGAAGAGCCCCCGGCCCAAGCAGGCCAAGTCCACCCGGGCCCCTCTGCTGACGACAGGAGCCCCCCGCCAAGAGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTGTAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGCAGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCGGCCCAGCACCTCGGCTGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTCGGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTCGGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGAGGACGCCGGGGCCGTGTGTGACGGCATGCCCCTGGGCTACGTCCCTCCCACGGCCCCCACGGACAGCAACAACTCCACGCCCAGGGAGGCTGCCTCCAGGCCCCCGTCCACCATGACGAGCCAGGCTCCAGGGACGGCAGGCGTTTCACCTCCTCCAGCCTCCCCTACTGTCCTTTGGGAGCCTGGACCGGAAGCCGGGTCCCCCCAGCTGCGCCTGGTGGCTGGGCCCAGCAAGTGCTCAGGTCGACTGGAGGTGTGGCATGACCAGCGCTGGGGGACCGTGTGTGACGATAGCTGGGACATGCGGGATTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGTGGACCTCAGCAGCCAGACCCTGCTGCTGGCCGCTTTGGCTGGGGTGCGGGCCCCATCTGGCTAGATGATGTGGGCTGTGTGGGGACCGAGGCTTCACTGTCCGACTGCCCTGCTGCTCCCTGGGGAAAGCACAACTGCGCTCACAATGAGGATGTTGGGGTCACCTGCACTGGGCCCCCAGGCCTGGACTCCATCTCAGACCCCTTCAGCTGGAGCTGGATTCCTGGACTGGGGAGAGATCGGGATGCCTGGCTCCCGGGAGAGCTGGCCACCAAGCCCTCTGCAAGTGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAGTGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGGCCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTACCTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTGACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAATGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTCCCTGGAGCCATCTGCTGAGATCCCAGAAGGGTCTCCAGAGTCACCCAAAGACCCGGCCCCCTCTCCCAGTGTTAGCACCACTGGGGAATCAGGCCTGTTCCGGGTTCGTCTGGCCGATGGGCCCAACCGCTGTGCTGGCCGGCTGGAAGTGTGGCATGCCGGACGCTGGGGAACAGTGTGTGATGACAACTGGGACCTGCGGGACGCCACTGTGGCCTGCTGGGAACTGGGCTGTGGAAAGGTCCGGCCTCGAGTAGGCAAAACCCATTACGGCCCTGGGACTGGGCCCATCTGGCTGGATGACATGGGCTGTAAGGGAAGCGAGGCCTCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACGAGGAAGACGTGGGGCTCACCTGCACTGGCTACACAGACTATGACGATTATCCCCCCTGGACCTGGGACCCCACCTCAAGAGAGGACCTGGCCAAGGGGACTACCACAGCGGGGGTACCTGGACACACTCTCCCCTGGAGGACCACCCGGCGCCCGGGTAGCTCCTCCCCAGCAATAAGGCGCCTGCCGGACACAGGCAGCAAAGATGGTTACAAGCTTCCCTGGACGTGGGACACACCATCAGGAAGGGGCCTGGCTGAGGGGACCCCTACCGCAGGCAAACTAGGACCAACTCTTGGGGCTGGCACCACCAGGAGCCCAGGCAGTCCTCCAACTCTGAGAGTCCATGGAGACACAGGTTCCCCGAGGAAACCGTGGCCCGAGCGCCGGCCACCGCGGCCCGCTGCGACCAGGACAGCGCCCCCAACCCCGTCCCCAGGTCCCTCCGCCTCTCCGGGACCCCCAGGCCCAGCGCTGACCTCTGACTCCAGTCGAGAGCTCACTCCCCACTCAGCCTTGACGTCCGAGGCGACCTCTGACGCTCCGGACACTTCACCACCCACCCCAGACCCGGCCTCCCGGACGAACCCCGACCTCATCTTGACAAGCCCTGACTTTGCTTTGTCCACCCCTGACTCCAGTGTGGTTCCCGCGTTGACCCCGGAGCCCTCACCCACGCCCTTACCCACCTTGCCCAAAGAGCTGACCTCTGACCCTTCTACACCGTCGGAGGTGACCAGCCTTTCCCCTACCTCAGAGCAGGTCCCAGAATCTGACACAACCCCAGATTTGGACACAACTCCATACTCCAGTACAGTCTCAGAATATTCTAGATCCCCAGACCCCTCCCCAAGCCCTCACCCCACTACTACCCCTGATCCCACCATGGCCCCTGACCCCATCACAACCCTTAACCCTACTGTGACCCCTCACTTCCCTACCACCCCTCACCCCACCACGACCCCTCACCCCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACAACCCCTCACTCCACAACCCCTCACCCCACCACGACCCCTCATCCCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACGATGCCTCATCCCACCACGACCCCTCACCCCACCACGACTCCTCACCCCACCACAACCCCTCACCCCACCACAACCCCTCACCCCACCATGACTCCTGACCCCACCACGACCCCTTACCCCACCACTACTCCTGATCCCACCACGACCCCTCACCCCACAACTCCTGACCCTTCCTCAACCCCTGTCATCACTACTGTGTCCCTTCCAACCTCCTTGGGGACAGAACTCTCCTCTCCCACTCTAGCACCAACAGTCAAGCCCAGTCTGCACCCCCAGTTGACCTTCACAGCACCTGCCCCTCACACCTCCACATCCCAGATACCCACCTTAGAGCCCTCTCCAGCCTTGGAGTCCAGCCCCTCCAGGTCCTCCACAGCCACAAGCATGGACCCACTGTCCACTGAGGACTTCAAGCCACCCAGAAGCCAGAGCCCCAACCTAACCCCTCCACCCACCCATACCCCACACTCAGCCTCTGACCTTACTGTGTCCCCTGACCCCCTCCTTTCCCCCACAGCCCACCCCTTGGATCATCCTCCCCTTGACCCCCTCACCCTAGGGCCAACTCCTGGTCAGAGCCCAGGCCCCCATGGTCCATGTGTGGCCCCAACACCACCTGTAAGGGTCATGGCTTGTGAGCCACCTGCCCTGGTGGAGCTGGTGGCTGCTGTGAGGGATGTGGGTGGTCAGCTGCAGAGACTGACCCAGGTCGTGGAACAGGAGCGGCAGGAGCGCCAAGCCCTGCTGCTGGGGCTGACGCAGCTGGTAGAAGCTGCCCGGGGTCTGGGGCAGCTGGGTGAGGCTGTGAAGAGACTGGCAGAGATGGCCTGGACCACCAGCATGCCTGCACCAACCACCACTACCCCAGAGGAAGAAGAAAGACCCCTGAGGGGAGACGTGTGA
Amino sequence
MRVLACLLAALVGIQAVERLRLADGPHGCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRQLGCGGALAAPGGAFFGEGAGPVWLSELACRGNEGQLGLCHHRGWKAHICSHEEDAGVVCAGQRVANSRDDSTSPLDGAPWPGLLLELSPSTEEPLVTHAPRPAGNPQNASRKKSPRPKQAKSTRAPLLTTGAPRQERLRLVSGPHRCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRELGCGGALAAPGGARFGPGAGPVWMDDVGCGGGEQALRDCPRSPWGRSNCDHSEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAWDLRDAAVACRELGCGGALAAPGGAFFGEGSGPIILDDLRCRGNETALRFCPARPWGQHDCHHREDAGAVCDGMPLGYVPPTAPTDSNNSTPREAASRPPSTMTSQAPGTAGVSPPPASPTVLWEPGPEAGSPQLRLVAGPSKCSGRLEVWHDQRWGTVCDDSWDMRDSAVVCRELGCGGPQQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSDCPAAPWGKHNCAHNEDVGVTCTGPPGLDSISDPFSWSWIPGLGRDRDAWLPGELATKPSASVTASVLEKTTTKAPGKMPKSTKKWVTKNAKRPTTQPPVMPTTKHSRAQSPPDLTSQTTAALTTEASRRPTSEFTRRPTTEAPQRWTSHTTATLTPQAPRERTTKTMAMLTTQGPQEMTSESTIKSIPQASLEPSAEIPEGSPESPKDPAPSPSVSTTGESGLFRVRLADGPNRCAGRLEVWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHYGPGTGPIWLDDMGCKGSEASLSDCPSGAWGKHNCDHEEDVGLTCTGYTDYDDYPPWTWDPTSREDLAKGTTTAGVPGHTLPWRTTRRPGSSSPAIRRLPDTGSKDGYKLPWTWDTPSGRGLAEGTPTAGKLGPTLGAGTTRSPGSPPTLRVHGDTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALTSDSSRELTPHSALTSEATSDAPDTSPPTPDPASRTNPDLILTSPDFALSTPDSSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSSTVSEYSRSPDPSPSPHPTTTPDPTMAPDPITTLNPTVTPHFPTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTTITHSTMIPDPTTTPQPFTTMQPTTTPHSTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTTMQPTTMPHPTTTPHPTTTPHPTTTPHPTTTPHPTMTPDPTTTPYPTTTPDPTTTPHPTTPDPSSTPVITTVSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALESSPSRSSTATSMDPLSTEDFKPPRSQSPNLTPPPTHTPHSASDLTVSPDPLLSPTAHPLDHPPLDPLTLGPTPGQSPGPHGPCVAPTPPVRVMACEPPALVELVAAVRDVGGQLQRLTQVVEQERQERQALLLGLTQLVEAARGLGQLGEAVKRLAEMAWTTSMPAPTTTTPEEEERPLRGDV*