ENST00000389623.11 SSC5D

Information
Transcript ID
ENST00000389623.11
Genome
hg19
Position
chr19:55,999,803-56,030,466
Strand
+
CDS length
4,722
Amino acid length
1,574
Gene symbol
SSC5D
Gene type
protein-coding
Gene description
scavenger receptor cysteine rich family member with 5 domains
Gene Entrez Gene ID
284297
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 55,999,803 55,999,981
2 56,000,373 56,000,399
3 56,000,721 56,001,029
4 56,001,249 56,001,362
5 56,001,665 56,001,775
6 56,002,139 56,002,447
7 56,004,962 56,005,279
8 56,005,977 56,006,150
9 56,009,247 56,009,564
10 56,011,183 56,011,779
11 56,011,857 56,012,171
12 56,012,401 56,012,568
13 56,024,378 56,024,539
14 56,028,591 56,030,466
CDS
Exon number Type Start Stop
1 CDS 55,999,957 55,999,981
2 CDS 56,000,373 56,000,399
3 CDS 56,000,721 56,001,029
4 CDS 56,001,249 56,001,362
5 CDS 56,001,665 56,001,775
6 CDS 56,002,139 56,002,447
7 CDS 56,004,962 56,005,279
8 CDS 56,005,977 56,006,150
9 CDS 56,009,247 56,009,564
10 CDS 56,011,183 56,011,779
11 CDS 56,011,857 56,012,171
12 CDS 56,012,401 56,012,568
13 CDS 56,024,378 56,024,539
14 CDS 56,028,591 56,030,365
Other genome
Genome Chromosome Start End Links
hg38 chr19 55,488,436 55,519,099 Link
CDS sequence
ATGAGGGTCTTGGCCTGCCTCCTTGCGGCCCTGGTGGGGATCCAGGCTGTTGAGCGCCTGCGCCTGGCCGATGGCCCCCATGGGTGCGCTGGCCGCCTGGAGGTCTGGCATGGCGGGCGCTGGGGCACCGTGTGTGATGACGGCTGGGACCTGCGCGATGCCGCCGTGGCCTGCCGGCAGCTGGGCTGCGGAGGGGCACTGGCCGCCCCGGGAGGCGCCTTCTTCGGGGAGGGGGCAGGGCCTGTGTGGCTCAGCGAGCTGGCTTGCCGGGGCAACGAGGGGCAGCTGGGCCTCTGCCACCACCGGGGCTGGAAGGCCCACATCTGCTCCCACGAGGAGGACGCGGGCGTCGTCTGCGCAGGTCAGCGTGTGGCTAACTCCAGGGACGACTCAACATCTCCCCTGGATGGGGCTCCCTGGCCAGGGCTGTTGCTGGAGCTGAGCCCCAGCACGGAGGAGCCCCTGGTGACACATGCCCCCCGCCCAGCTGGGAACCCCCAGAACGCCTCCCGGAAGAAGAGCCCCCGGCCCAAGCAGGCCAAGTCCACCCGGGCCCCTCTGCTGACGACAGGAGCCCCCCGCCAAGAGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTGTAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGCAGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCGGCCCAGCACCTCGGCTGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTCGGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTCGGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGAGGACGCCGGGGCCGTGTGTGACGGCATGCCCCTGGGCTACGTCCCTCCCACGGCCCCCACGGACAGCAACAACTCCACGCCCAGGGAGGCTGCCTCCAGGCCCCCGTCCACCATGACGAGCCAGGCTCCAGGGACGGCAGGCGTTTCACCTCCTCCAGCCTCCCCTACTGTCCTTTGGGAGCCTGGACCGGAAGCCGGGTCCCCCCAGCTGCGCCTGGTGGCTGGGCCCAGCAAGTGCTCAGGTCGACTGGAGGTGTGGCATGACCAGCGCTGGGGGACCGTGTGTGACGATAGCTGGGACATGCGGGATTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGTGGACCTCAGCAGCCAGACCCTGCTGCTGGCCGCTTTGGCTGGGGTGCGGGCCCCATCTGGCTAGATGATGTGGGCTGTGTGGGGACCGAGGCTTCACTGTCCGACTGCCCTGCTGCTCCCTGGGGAAAGCACAACTGCGCTCACAATGAGGATGTTGGGGTCACCTGCACTGGGCCCCCAGGCCTGGACTCCATCTCAGACCCCTTCAGCTGGAGCTGGATTCCTGGACTGGGGAGAGATCGGGATGCCTGGCTCCCGGGAGAGCTGGCCACCAAGCCCTCTGCAAGTGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAGTGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGGCCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTACCTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTGACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAATGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTCCCTGGAGCCATCTGCTGAGATCCCAGAAGGGTCTCCAGAGTCACCCAAAGACCCGGCCCCCTCTCCCAGTGTTAGCACCACTGGGGAATCAGGCCTGTTCCGGGTTCGTCTGGCCGATGGGCCCAACCGCTGTGCTGGCCGGCTGGAAGTGTGGCATGCCGGACGCTGGGGAACAGTGTGTGATGACAACTGGGACCTGCGGGACGCCACTGTGGCCTGCTGGGAACTGGGCTGTGGAAAGGTCCGGCCTCGAGTAGGCAAAACCCATTACGGCCCTGGGACTGGGCCCATCTGGCTGGATGACATGGGCTGTAAGGGAAGCGAGGCCTCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACGAGGAAGACGTGGGGCTCACCTGCACTGGCTACACAGACTATGACGATTATCCCCCCTGGACCTGGGACCCCACCTCAAGAGAGGACCTGGCCAAGGGGACTACCACAGCGGGGGTACCTGGACACACTCTCCCCTGGAGGACCACCCGGCGCCCGGGTAGCTCCTCCCCAGCAATAAGGCGCCTGCCGGACACAGGCAGCAAAGATGGTTACAAGCTTCCCTGGACGTGGGACACACCATCAGGAAGGGGCCTGGCTGAGGGGACCCCTACCGCAGGCAAACTAGGACCAACTCTTGGGGCTGGCACCACCAGGAGCCCAGGCAGTCCTCCAACTCTGAGAGTCCATGGAGACACAGGTTCCCCGAGGAAACCGTGGCCCGAGCGCCGGCCACCGCGGCCCGCTGCGACCAGGACAGCGCCCCCAACCCCGTCCCCAGGTCCCTCCGCCTCTCCGGGACCCCCAGGCCCAGCGCTGACCTCTGACTCCAGTCGAGAGCTCACTCCCCACTCAGCCTTGACGTCCGAGGCGACCTCTGACGCTCCGGACACTTCACCACCCACCCCAGACCCGGCCTCCCGGACGAACCCCGACCTCATCTTGACAAGCCCTGACTTTGCTTTGTCCACCCCTGACTCCAGTGTGGTTCCCGCGTTGACCCCGGAGCCCTCACCCACGCCCTTACCCACCTTGCCCAAAGAGCTGACCTCTGACCCTTCTACACCGTCGGAGGTGACCAGCCTTTCCCCTACCTCAGAGCAGGTCCCAGAATCTGACACAACCCCAGATTTGGACACAACTCCATACTCCAGTACAGTCTCAGAATATTCTAGATCCCCAGACCCCTCCCCAAGCCCTCACCCCACTACTACCCCTGATCCCACCATGGCCCCTGACCCCATCACAACCCTTAACCCTACTGTGACCCCTCACTTCCCTACCACCCCTCACCCCACCACGACCCCTCACCCCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACAACCCCTCACTCCACAACCCCTCACCCCACCACGACCCCTCATCCCACCACCATCACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACGATGCCTCATCCCACCACGACCCCTCACCCCACCACGACTCCTCACCCCACCACAACCCCTCACCCCACCACAACCCCTCACCCCACCATGACTCCTGACCCCACCACGACCCCTTACCCCACCACTACTCCTGATCCCACCACGACCCCTCACCCCACAACTCCTGACCCTTCCTCAACCCCTGTCATCACTACTGTGTCCCTTCCAACCTCCTTGGGGACAGAACTCTCCTCTCCCACTCTAGCACCAACAGTCAAGCCCAGTCTGCACCCCCAGTTGACCTTCACAGCACCTGCCCCTCACACCTCCACATCCCAGATACCCACCTTAGAGCCCTCTCCAGCCTTGGAGTCCAGCCCCTCCAGGTCCTCCACAGCCACAAGCATGGACCCACTGTCCACTGAGGACTTCAAGCCACCCAGAAGCCAGAGCCCCAACCTAACCCCTCCACCCACCCATACCCCACACTCAGCCTCTGACCTTACTGTGTCCCCTGACCCCCTCCTTTCCCCCACAGCCCACCCCTTGGATCATCCTCCCCTTGACCCCCTCACCCTAGGGCCAACTCCTGGTCAGAGCCCAGGCCCCCATGGTCCATGTGTGGCCCCAACACCACCTGTAAGGGTCATGGCTTGTGAGCCACCTGCCCTGGTGGAGCTGGTGGCTGCTGTGAGGGATGTGGGTGGTCAGCTGCAGAGACTGACCCAGGTCGTGGAACAGGAGCGGCAGGAGCGCCAAGCCCTGCTGCTGGGGCTGACGCAGCTGGTAGAAGCTGCCCGGGGTCTGGGGCAGCTGGGTGAGGCTGTGAAGAGACTGGCAGAGATGGCCTGGACCACCAGCATGCCTGCACCAACCACCACTACCCCAGAGGAAGAAGAAAGACCCCTGAGGGGAGACGTGTGA
Amino sequence
MRVLACLLAALVGIQAVERLRLADGPHGCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRQLGCGGALAAPGGAFFGEGAGPVWLSELACRGNEGQLGLCHHRGWKAHICSHEEDAGVVCAGQRVANSRDDSTSPLDGAPWPGLLLELSPSTEEPLVTHAPRPAGNPQNASRKKSPRPKQAKSTRAPLLTTGAPRQERLRLVSGPHRCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRELGCGGALAAPGGARFGPGAGPVWMDDVGCGGGEQALRDCPRSPWGRSNCDHSEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAWDLRDAAVACRELGCGGALAAPGGAFFGEGSGPIILDDLRCRGNETALRFCPARPWGQHDCHHREDAGAVCDGMPLGYVPPTAPTDSNNSTPREAASRPPSTMTSQAPGTAGVSPPPASPTVLWEPGPEAGSPQLRLVAGPSKCSGRLEVWHDQRWGTVCDDSWDMRDSAVVCRELGCGGPQQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSDCPAAPWGKHNCAHNEDVGVTCTGPPGLDSISDPFSWSWIPGLGRDRDAWLPGELATKPSASVTASVLEKTTTKAPGKMPKSTKKWVTKNAKRPTTQPPVMPTTKHSRAQSPPDLTSQTTAALTTEASRRPTSEFTRRPTTEAPQRWTSHTTATLTPQAPRERTTKTMAMLTTQGPQEMTSESTIKSIPQASLEPSAEIPEGSPESPKDPAPSPSVSTTGESGLFRVRLADGPNRCAGRLEVWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHYGPGTGPIWLDDMGCKGSEASLSDCPSGAWGKHNCDHEEDVGLTCTGYTDYDDYPPWTWDPTSREDLAKGTTTAGVPGHTLPWRTTRRPGSSSPAIRRLPDTGSKDGYKLPWTWDTPSGRGLAEGTPTAGKLGPTLGAGTTRSPGSPPTLRVHGDTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALTSDSSRELTPHSALTSEATSDAPDTSPPTPDPASRTNPDLILTSPDFALSTPDSSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSSTVSEYSRSPDPSPSPHPTTTPDPTMAPDPITTLNPTVTPHFPTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTTITHSTMIPDPTTTPQPFTTMQPTTTPHSTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTTMQPTTMPHPTTTPHPTTTPHPTTTPHPTTTPHPTMTPDPTTTPYPTTTPDPTTTPHPTTPDPSSTPVITTVSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALESSPSRSSTATSMDPLSTEDFKPPRSQSPNLTPPPTHTPHSASDLTVSPDPLLSPTAHPLDHPPLDPLTLGPTPGQSPGPHGPCVAPTPPVRVMACEPPALVELVAAVRDVGGQLQRLTQVVEQERQERQALLLGLTQLVEAARGLGQLGEAVKRLAEMAWTTSMPAPTTTTPEEEERPLRGDV*