ENST00000478836.6 IFT56

Information
Transcript ID
ENST00000478836.6
Genome
hg38
Position
chr7:139,133,778-139,189,802
Strand
+
CDS length
1,344
Amino acid length
448
Gene symbol
IFT56
Gene type
protein-coding
Gene description
intraflagellar transport 56
Gene Entrez Gene ID
79989
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 139,133,778 139,133,860
2 139,134,655 139,134,792
3 139,137,847 139,137,939
4 139,139,890 139,140,004
5 139,142,256 139,142,305
6 139,160,948 139,161,022
7 139,165,132 139,165,234
8 139,166,843 139,166,895
9 139,168,344 139,168,397
10 139,169,289 139,169,352
11 139,178,214 139,178,302
12 139,178,515 139,178,598
13 139,179,574 139,179,643
14 139,181,092 139,181,198
15 139,187,406 139,187,539
16 139,189,321 139,189,802
CDS
Exon number Type Start Stop
1 CDS 139,133,858 139,133,860
2 CDS 139,134,655 139,134,792
3 CDS 139,137,847 139,137,939
4 CDS 139,139,890 139,140,004
5 CDS 139,142,256 139,142,305
6 CDS 139,160,948 139,161,022
7 CDS 139,165,132 139,165,234
8 CDS 139,166,843 139,166,895
9 CDS 139,168,344 139,168,397
10 CDS 139,169,289 139,169,352
11 CDS 139,178,214 139,178,302
12 CDS 139,178,515 139,178,598
13 CDS 139,179,574 139,179,643
14 CDS 139,181,092 139,181,198
15 CDS 139,187,406 139,187,539
16 CDS 139,189,321 139,189,432
Other genome
Genome Chromosome Start End Links
hg19 chr7 138,818,524 138,874,548 Link
CDS sequence
ATGATGCTTTCAAGGGCCAAACCTGCTGTAGGCAGAGGCGTACAGCACACTGACAAAAGAAAGAAGAAAGGTAGGAAGATTCCAAAACTAGAGGAGCTACTTTCAAAAAGAGATTTCACTGGAGCTATTACCCTGTTGGAGTTCAAACGTCATGTTGGGGAAGAAGAAGAGGATACTAATTTGTGGATTGGATATTGTGCCTTTCACCTGGGTGACTACAAGAGAGCTCTGGAGGAATACGAAAATGCTACAAAAGAGGAAAATTGTAATTCTGAAGTCTGGGTGAACCTAGCTTGCACCTACTTCTTTCTTGGGATGTATAAACAAGCTGAAGCAGCTGGATTTAAAGCTTCAAAAAGCCGACTCCAAAACCGCCTCCTCTTCCACTTGGCTCACAAGGCAGAACTCAAAAGCTTGATGGACAATGCTTCTTCATCCTTTGAATTTGCTAAAGAACTCATCAGGCACAATCTGGTTGTTTTCCGAGGAGGTGAAGGGGCTTTGCAGGTTTTACCTCCCCTAGTTGATGTCATTCCTGAAGCTAGGCTAAACTTGGTGATTTACTACCTTCGTCAAGATGTACAAGAAGCTTATAACTTAATTAAGGATCTGGAACCTACTACTCCTCAGGAGTATATTCTCAAAGGAGTGGTCAATGCAGCCCTTGGCCAGGAAATGGGTTCAAGGGATCATATGAAAATTGCCCAGCAGTTCTTCCAGTTGGTGGGAGGATCAGCTAGTGAATGTGATACAATACCAGGGAGGCAGTGCATGGCTTCCTGTTTCTTCCTGCTTAAGCAATTTGATGATGTTTTGATTTACCTCAACTCATTTAAGAGTTACTTCTATAATGATGACATCTTTAACTTTAATTATGCCCAAGCCAAAGCTGCAACAGGCAATACCAGTGAGGGCGAAGAGGCGTTCCTCTTGATCCAAAGTGAGAAGATGAAAAATGATTACATTTACCTCAGCTGGTTAGCTCGGTGCTATATTATGAATAAGAAACCAAGACTAGCCTGGGAACTTTATCTTAAGATGGAAACCTCCGGCGAGTCCTTCAGTCTCTTACAGCTCATTGCTAATGACTGCTACAAGATGGGCCAGTTTTACTATTCTGCCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATATTGGGAAGGCAAACGGGGTGCCTGTGTGGGCATTTTCCAGATGATCATAGCTGGGAGAGAACCCAAAGAGACCCTTCGAGAAGTGCTCCATTTACTGAGAAGCACAGGTAACACCCAAGTAGAATACATGATCCGGATCATGAAGAAATGGGCCAAAGAAAACAGAGTGTCCATCTAA
Amino sequence
MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAGREPKETLREVLHLLRSTGNTQVEYMIRIMKKWAKENRVSI*