ENST00000646925.1 CLEC20A
Information
- Transcript ID
- ENST00000646925.1
- Genome
- hg38
- Position
- chr1:178,479,247-178,486,921
- Strand
- -
- CDS length
- 669
- Amino acid length
- 223
- Gene symbol
- CLEC20A
- Gene type
- protein-coding
- Gene description
- C-type lectin domain containing 20A
- Gene Entrez Gene ID
- 400797
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 4 | 178,479,247 | 178,479,615 |
| 3 | 178,482,312 | 178,482,397 |
| 2 | 178,483,175 | 178,483,282 |
| 1 | 178,486,434 | 178,486,921 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 4 | CDS | 178,479,535 | 178,479,615 |
| 3 | CDS | 178,482,312 | 178,482,397 |
| 2 | CDS | 178,483,175 | 178,483,282 |
| 1 | CDS | 178,486,434 | 178,486,827 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr1 | 178,448,382 | 178,456,056 | Link |
CDS sequence
ATGCCGCCGGTCACTGCCCAGAGTGCGTCTTCCCACCCTGCGCCCTCGGCGTCCCAGCCCTCCAGCCCTGCTGCGGCCTCTCGGGGGAGCCTCTCTGTCCCCCAGGAAGTAACTGCGACTCTTCTGGCCTCCGCTTCGAGCCCCACACTCGATGCCACCCGCGATGCCCCAGCTACTCCCAGGATAGCAGCACCCCCTGGGTCTGCCACATCCAGCCGGGGCCTCGGCTCCCAGGCTCAAGGGAGCTCTCTGGGGACCAAAGAAAGCATCTCGGACTCATTTGGCTTAGGGAGCCCAGCCGTGACCCAGAGGACAACTGCACCCCCTGACTCTGCAGCCCTGAGCCAAGACACCCGCCCAGAGGCAGCTGGGAGCTGGCCAGGGCCCCAAACAGCTGTGGCCAGTGTAGGGAGTGGCACTGATAGAAGAGATACAGCTGCTGCCACGGAGGCCCAACATCTGAGTTCAGAATCTAAAGAAAAAACATCAGCACAAAAATCAGGGCACCCTTTTGGAATCTTGAAAGCAGACTTTACCATCTCAACTCTGATGGACCCAGAAGAGATGAAAGACCAATTTCTGAGACAGATCCAGGAAGTCTTAAAGCTTACATTAGGTCACGAACAATTTAGACTGAAATGGGTCAGCTTCGAAGTGAACAAAAAATAG
Amino sequence
MPPVTAQSASSHPAPSASQPSSPAAASRGSLSVPQEVTATLLASASSPTLDATRDAPATPRIAAPPGSATSSRGLGSQAQGSSLGTKESISDSFGLGSPAVTQRTTAPPDSAALSQDTRPEAAGSWPGPQTAVASVGSGTDRRDTAAATEAQHLSSESKEKTSAQKSGHPFGILKADFTISTLMDPEEMKDQFLRQIQEVLKLTLGHEQFRLKWVSFEVNKK*