ENST00000601170.5 SMG9

Information
Transcript ID
ENST00000601170.5
Genome
hg38
Position
chr19:43,732,270-43,754,962
Strand
-
CDS length
1,488
Amino acid length
496
Gene symbol
SMG9
Gene type
protein-coding
Gene description
SMG9 nonsense mediated mRNA decay factor
Gene Entrez Gene ID
56006
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
13 43,732,270 43,733,002
12 43,733,324 43,733,452
11 43,733,626 43,733,733
10 43,734,389 43,734,495
9 43,737,597 43,737,682
8 43,738,122 43,738,217
7 43,740,107 43,740,218
6 43,744,772 43,744,884
5 43,747,442 43,747,539
4 43,747,633 43,747,897
3 43,747,978 43,748,052
2 43,750,592 43,750,747
1 43,754,654 43,754,962
CDS
Exon number Type Start Stop
13 CDS 43,732,854 43,733,002
12 CDS 43,733,324 43,733,452
11 CDS 43,733,626 43,733,733
10 CDS 43,734,389 43,734,495
9 CDS 43,737,597 43,737,682
8 CDS 43,738,122 43,738,217
7 CDS 43,740,107 43,740,218
6 CDS 43,744,772 43,744,884
5 CDS 43,747,442 43,747,539
4 CDS 43,747,633 43,747,897
3 CDS 43,747,978 43,748,052
2 CDS 43,750,592 43,750,741
Other genome
Genome Chromosome Start End Links
hg19 chr19 44,236,422 44,259,114 Link
CDS sequence
ATGTCTGAGTCTGGACACAGTCAGCCTGGACTCTATGGGATAGAGCGGCGGCGACGGTGGAAGGAGCCTGGCTCTGGTGGCCCCCAGAATCTCTCTGGGCCTGGTGGTCGGGAGAGGGACTACATTGCACCATGGGAAAGAGAGAGAAGGGATGCCAGCGAAGAGACAAGCACTTCCGTCATGCAGAAAACCCCCATCATCCTCTCAAAACCTCCAGCAGAGCGGTCAAAACAGCCACCACCTCCAACAGCCCCTGCTGCCCCGCCTGCTCCAGCCCCTCTGGAGAAGCCCATCGTTCTCATGAAGCCACGGGAGGAGGGGAAGGGGCCTGTGGCCGTGACAGGTGCCTCTACCCCTGAGGGCACCGCCCCACCACCCCCTGCAGCCCCTGCGCCACCCAAGGGGGAGAAGGAGGGGCAGAGACCCACACAGCCTGTGTACCAGATCCAGAACCGGGGCATGGGCACTGCCGCACCAGCAGCCATGGACCCTGTCGTGGGTCAGGCCAAACTACTGCCCCCAGAGCGCATGAAGCACAGCATCAAGTTGGTGGATGACCAGATGAATTGGTGTGACAGTGCCATCGAGTACCTGTTGGATCAGACTGATGTGTTGGTGGTTGGTGTCCTGGGCCTCCAGGGGACAGGCAAGTCCATGGTCATGTCATTGTTGTCAGCCAACACTCCAGAGGAGGACCAGAGGACTTATGTTTTCCGGGCCCAGAGCGCTGAAATGAAGGAACGAGGGGGCAACCAGACCAGTGGCATCGACTTCTTTATTACCCAAGAACGGATTGTTTTCCTGGACACACAGCCCATCCTGAGCCCTTCTATCCTAGACCATCTCATCAATAATGACCGCAAACTGCCTCCAGAGTACAACCTTCCCCACACTTACGTTGAAATGCAGTCACTCCAGATTGCTGCCTTCCTTTTCACGGTCTGCCATGTGGTGATTGTTGTCCAGGACTGGTTCACAGACCTCAGTCTCTACAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCCACGAGTCCAGCAGCTCATCGGGCTCCGATGAAGGCACCGAGTACTACCCCCACCTAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTGCGGCAGATGCACCTGATGATTGACCAGCTCATGGCCCACTCCCACCTGCGTTACAAGGGAACTCTGTCCATGTTACAATGCAATGTCTTCCCGGGGCTTCCACCTGACTTCCTGGACTCTGAGGTCAACTTATTCCTGGTACCCTTCATGGACAGTGAAGCAGAGAGTGAAAACCCACCAAGAGCAGGACCTGGTTCCAGCCCACTCTTCTCCCTGCTGCCTGGGTATCGTGGCCACCCCAGTTTCCAGTCCTTGGTGAGCAAGCTCCGGAGCCAAGTGATGTCCATGGCCCGGCCACAGCTGTCACACACGATCCTCACCGAGAAGAACTGGTAA
Amino sequence
MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSVMQKTPIILSKPPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPEGTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNW*