ENST00000372409.8 PCIF1

Information
Transcript ID
ENST00000372409.8
Genome
hg38
Position
chr20:45,934,683-45,948,020
Strand
+
CDS length
2,115
Amino acid length
705
Gene symbol
PCIF1
Gene type
protein-coding
Gene description
phosphorylated CTD interacting factor 1
Gene Entrez Gene ID
63935
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 45,934,683 45,934,804
2 45,937,418 45,937,585
3 45,938,981 45,939,123
4 45,939,215 45,939,339
5 45,940,475 45,940,612
6 45,940,809 45,940,939
7 45,941,053 45,941,207
8 45,943,097 45,943,244
9 45,943,340 45,943,423
10 45,943,666 45,943,765
11 45,944,868 45,945,030
12 45,945,711 45,945,883
13 45,946,029 45,946,115
14 45,946,200 45,946,384
15 45,947,073 45,947,166
16 45,947,263 45,947,438
17 45,947,524 45,948,020
CDS
Exon number Type Start Stop
3 CDS 45,939,000 45,939,123
4 CDS 45,939,215 45,939,339
5 CDS 45,940,475 45,940,612
6 CDS 45,940,809 45,940,939
7 CDS 45,941,053 45,941,207
8 CDS 45,943,097 45,943,244
9 CDS 45,943,340 45,943,423
10 CDS 45,943,666 45,943,765
11 CDS 45,944,868 45,945,030
12 CDS 45,945,711 45,945,883
13 CDS 45,946,029 45,946,115
14 CDS 45,946,200 45,946,384
15 CDS 45,947,073 45,947,166
16 CDS 45,947,263 45,947,438
17 CDS 45,947,524 45,947,755
Other genome
Genome Chromosome Start End Links
hg19 chr20 44,563,322 44,576,659 Link
CDS sequence
ATGGCCAATGAGAATCACGGCAGCCCCCGGGAGGAAGCGTCCCTGCTGAGTCACTCCCCAGGTACCTCCAATCAGAGCCAGCCCTGTTCTCCAAAGCCAATCCGCCTGGTTCAGGACCTCCCAGAGGAGCTGGTGCATGCAGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTCCCTACTACTTCAACCGATTCACCAACCAGTCCCTGTGGGAGATGCCCGTGCTGGGGCAGCACGATGTGATTTCGGACCCTTTGGGGCTGAATGCGACCCCACTGCCCCAAGACTCAAGCTTGGTGGAAACTCCCCCGGCTGAGAACAAGCCCAGAAAGCGGCAGCTCTCGGAAGAGCAGCCAAGCGGCAATGGTGTGAAGAAGCCCAAGATTGAAATCCCAGTGACACCCACAGGCCAGTCGGTGCCCAGCTCCCCCAGTATCCCAGGAACCCCAACGCTGAAGATGTGGGGTACGTCCCCTGAAGATAAACAGCAGGCAGCTCTCCTACGACCCACTGAGGTCTACTGGGACCTGGACATCCAGACCAATGCTGTCATCAAGCACCGGGGGCCTTCAGAGGTGCTGCCCCCGCATCCCGAAGTGGAACTGCTCCGCTCTCAGCTCATCCTGAAGCTTCGGCAGCACTATCGGGAGCTGTGCCAGCAGCGAGAGGGCATTGAGCCTCCACGGGAGTCTTTCAACCGCTGGATGCTGGAGCGCAAGGTGGTAGACAAAGGATCTGACCCCCTGTTGCCCAGCAACTGTGAACCAGTCGTGTCACCTTCCATGTTTCGTGAAATCATGAACGACATTCCTATCAGGTTATCCCGAATCAAGTTCCGGGAGGAAGCCAAGCGCCTGCTCTTTAAATATGCGGAGGCCGCCAGGCGGCTCATCGAGTCCAGGAGTGCATCCCCTGACAGTAGGAAGGTGGTCAAATGGAATGTGGAAGACACCTTTAGCTGGCTTCGGAAGGACCACTCAGCCTCCAAGGAGGACTACATGGATCGCCTGGAGCATCTGCGGAGGCAGTGTGGCCCCCACGTCTCGGCCGCAGCCAAGGACTCCGTGGAAGGCATCTGCAGTAAGATCTACCACATCTCCCTGGAGTACGTCAAACGGATCCGAGAGAAGCACCTTGCCATCCTCAAGGAAAACAACATCTCAGAGGAGGTGGAGGCCCCTGAGGTGGAGCCCCGCCTAGTGTACTGCTACCCAGTCCGGCTGGCTGTGTCTGCACCGCCCATGCCCAGCGTGGAGATGCACATGGAGAACAACGTGGTCTGCATCCGGTATAAGGGAGAGATGGTCAAGGTCAGCCGCAACTACTTCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATTGATGACTCTGCCTTTGAGAGGTTCCTGCCCCGGGTCTGGTGTCTTCTCCGACGGTACCAGATGATGTTCGGCGTGGGCCTCTACGAGGGGACTGGCCTGCAGGGATCGCTGCCTGTGCATGTCTTTGAGGCCCTCCACCGACTCTTTGGCGTCAGCTTCGAGTGCTTCGCCTCACCCCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCCGACACAGACGGCTACTTTGGCTCCCGCGGGCCCTGCCTAGACTTTGCTCCACTGAGTGGTTCATTTGAGGCCAACCCTCCCTTCTGCGAGGAGCTCATGGATGCCATGGTCTCTCACTTTGAGAGACTGCTTGAGAGCTCACCGGAGCCCCTGTCCTTCATCGTGTTCATCCCTGAGTGGCGGGAACCCCCAACACCAGCGCTCACCCGCATGGAGCAGAGCCGCTTCAAACGCCACCAGTTGATCCTGCCTGCCTTTGAGCATGAGTACCGCAGTGGCTCCCAGCACATCTGCAAGAAGGAGGAAATGCACTACAAGGCCGTCCACAACACGGCTGTGCTCTTCCTACAGAACGACCCTGGCTTTGCCAAGTGGGCGCCGACGCCTGAACGGCTGCAGGAGCTGAGTGCTGCCTACCGGCAGTCAGGCCGCAGCCACAGCTCTGGTTCTTCCTCATCGTCCTCCTCGGAGGCCAAGGACCGGGACTCGGGCCGTGAGCAGGGTCCTAGCCGCGAGCCTCACCCCACTTAA
Amino sequence
MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYRQSGRSHSSGSSSSSSSEAKDRDSGREQGPSREPHPT*