ENST00000480139.5 LIME1
Information
- Transcript ID
- ENST00000480139.5
- Genome
- hg19
- Position
- chr20:62,368,021-62,370,158
- Strand
- +
- CDS length
- 531
- Amino acid length
- 177
- Gene symbol
- LIME1
- Gene type
- protein-coding
- Gene description
- Lck interacting transmembrane adaptor 1
- Gene Entrez Gene ID
- 54923
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 62,368,021 | 62,368,064 |
| 2 | 62,368,886 | 62,369,000 |
| 3 | 62,369,174 | 62,369,255 |
| 4 | 62,369,361 | 62,369,413 |
| 5 | 62,369,536 | 62,369,852 |
| 6 | 62,369,951 | 62,370,158 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 62,368,903 | 62,369,000 |
| 3 | CDS | 62,369,174 | 62,369,255 |
| 4 | CDS | 62,369,361 | 62,369,413 |
| 5 | CDS | 62,369,536 | 62,369,833 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr20 | 63,736,669 | 63,738,805 | Link |
CDS sequence
ATGGGGCTGCCAGTGTCCTGGGCCCCTCCTGCCCTCTGGGTTCTAGGGTGCTGCGCCCTGCTCCTCTCGCTGTGGGCGCTGTGCACAGCCTGCCGCAGGCCCGAGGACGCTGTAGCCCCCAGGAAGAGGGCGCGGAGGCAGCGGGCGAGGCTGCAGGGCAGTGCGACGGCGGCGGAAGCGCAAGTCGGACACCAGACTGCACGAGCTGCACCGGGGCCCGCGCAGCAGCAGGGCCCTGCGGCCTGCCAGCATGGATCTCCTGCGCCCACACTGGCTGGAGGTGTCCAGGGACATCACCGGACCGCAGGCAGCCCCCTCTGCCTTCCCACACCAGGAGCTGCCCCGGGCTCTGCCGGCAGCTGCAGCCACCGCAGGGTGCGCTGGCCTCGAGGCCACCTATTCCAACGTGGGGCTGGCGGCCCTTCCCGGGGTCAGCCTGGCGGCCAGCCCTGTGGTGGCCGAGTATGCCCGCGTCCAGAAGCGCAAAGGGACCCATCGCAGTCCCCAAGAGCCACAGCAGGGGAAGACTGA
Amino sequence
MGLPVSWAPPALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEAQVGHQTARAAPGPAQQQGPAACQHGSPAPTLAGGVQGHHRTAGSPLCLPTPGAAPGSAGSCSHRRVRWPRGHLFQRGAGGPSRGQPGGQPCGGRVCPRPEAQRDPSQSPRATAGED*