ENST00000358894.11 COL20A1

Information
Transcript ID
ENST00000358894.11
Genome
hg19
Position
chr20:61,924,538-61,966,158
Strand
+
CDS length
3,855
Amino acid length
1,285
Gene symbol
COL20A1
Gene type
protein-coding
Gene description
collagen type XX alpha 1 chain
Gene Entrez Gene ID
57642
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 61,924,538 61,924,627
2 61,926,450 61,926,541
3 61,929,262 61,929,372
4 61,936,769 61,936,912
5 61,937,233 61,937,391
6 61,938,842 61,939,000
7 61,939,323 61,939,442
8 61,939,894 61,940,058
9 61,940,685 61,940,849
10 61,941,110 61,941,267
11 61,941,733 61,941,862
12 61,942,746 61,942,891
13 61,942,977 61,943,100
14 61,943,268 61,943,407
15 61,943,772 61,943,901
16 61,944,144 61,944,286
17 61,944,469 61,944,601
18 61,945,095 61,945,243
19 61,945,424 61,945,553
20 61,946,756 61,946,791
21 61,947,905 61,948,043
22 61,950,410 61,950,552
23 61,950,839 61,950,948
24 61,951,391 61,951,549
25 61,951,643 61,951,720
26 61,952,365 61,952,451
27 61,953,410 61,953,463
28 61,956,793 61,956,846
29 61,957,020 61,957,073
30 61,957,448 61,957,501
31 61,958,104 61,958,175
32 61,959,304 61,959,339
33 61,959,431 61,959,479
34 61,959,683 61,959,850
35 61,960,937 61,961,013
36 61,962,072 61,966,158
CDS
Exon number Type Start Stop
2 CDS 61,926,460 61,926,541
3 CDS 61,929,262 61,929,372
4 CDS 61,936,769 61,936,912
5 CDS 61,937,233 61,937,391
6 CDS 61,938,842 61,939,000
7 CDS 61,939,323 61,939,442
8 CDS 61,939,894 61,940,058
9 CDS 61,940,685 61,940,849
10 CDS 61,941,110 61,941,267
11 CDS 61,941,733 61,941,862
12 CDS 61,942,746 61,942,891
13 CDS 61,942,977 61,943,100
14 CDS 61,943,268 61,943,407
15 CDS 61,943,772 61,943,901
16 CDS 61,944,144 61,944,286
17 CDS 61,944,469 61,944,601
18 CDS 61,945,095 61,945,243
19 CDS 61,945,424 61,945,553
20 CDS 61,946,756 61,946,791
21 CDS 61,947,905 61,948,043
22 CDS 61,950,410 61,950,552
23 CDS 61,950,839 61,950,948
24 CDS 61,951,391 61,951,549
25 CDS 61,951,643 61,951,720
26 CDS 61,952,365 61,952,451
27 CDS 61,953,410 61,953,463
28 CDS 61,956,793 61,956,846
29 CDS 61,957,020 61,957,073
30 CDS 61,957,448 61,957,501
31 CDS 61,958,104 61,958,175
32 CDS 61,959,304 61,959,339
33 CDS 61,959,431 61,959,479
34 CDS 61,959,683 61,959,850
35 CDS 61,960,937 61,961,010
Other genome
Genome Chromosome Start End Links
hg38 chr20 63,293,186 63,334,806 Link
CDS sequence
ATGAGCTCCGGAGACCCTGCACACCTCGGCCTCTGCCTCTGGCTGTGGCTGGGCGCCACCCTGGGAAGAGAGCAAGTTCAAGCAAGCGGTCTCCTGAGGCTGGCTGTGCTGCCTGAGGACCGGCTGCAGATGAAGTGGAGAGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCCCATGGCAGGGGACTCGGAACAGGAGGTGATACTGACCACCAAGACCCCTAAGGCCACAGTGGGGGGCCTGAGCCCCTCCAAGGGCTACACCTTGCAGATCTTCGAGCTCACTGGCTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGATTGAGGATCTGAAGAGTAGCTCCCTGGACAGGAGCAGCCAGAGGCCCCTCGGCTCTGGAGCCCCGGAGCCCACCCCCTCCCACACGGGGAGCCCAGACCCTGAGCAGGCTTCTGAGCCCCAAGTTGCCTTCACACCAAGCCAGGATCCGCGCACTCCTGCCGGCCCCCAGTTCCGCTGCCTGCCCCCCGTGCCTGCTGACATGGTCTTCCTGGTGGACGGGTCCTGGAGCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTGGCCAGTGTCATCGCACCCTTTGAAATCGGGCCGGATAAGGTCCAAGTAGGCCTGACTCAGTACAGCGGGGATGCTCAGACTGAGTGGGACCTGAACTCCCTCAGCACCAAGGAACAGGTGCTGGCAGCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTTCACAGGCCTTGCCCTGACCCACGTGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCAGAGGCAGCCAAGGTGGTGATTCTGGTGACGGACGGCAAGTCCCAGGACGATGTGCACACTGCTGCCCGTGTCCTCAAGGACCTGGGCGTGAACGTCTTCGCTGTGGGTGTGAAGAACGCCGATGAGGCTGAGCTGAGGCTCCTGGCGTCCCCGCCGAGGGACATCACCGTCCACAGCGTGCTGGACTTCCTGCAGCTCGGCGCGCTGGCTGGCCTGCTCAGCCGTCTCATCTGCCAGAGGCTCCAGGGTGGGAGCCCGCGGCAGGGCCCAGCAGCGGCTCCAGCCCTGGACACCCTCCCTGCCCCCACCAGCCTGGTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTGGACTCCAGCCCCCCGGCACCCCCTCAAGTATCTGATCGTTTGGCGAGCCTCTAGAGGTGGCACCCCCAGGGAGGTGGTGGTGGAGGGACCCGCCGCCTCCACGGAGCTGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGGCCTGGTGACCACAGCACCTCTGCCTCCGCCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGTCCACCTCACCTGGCAGCCCTCGGCCGGGGCCACCCACTACCTGGTGCGATGTTCTCCTGCTTCCCCCAAGGGTGAAGAGGAGGAGCGAGAGGTGCAGGTCGGGCGGCCCGAGGTGCTGCTGGATGGCCTGGAACCTGGCAGGGACTATGAGGTCTCGGTGCAGAGCCTGCGAGGCCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCCCCACCCTGGCCCCCCCGAGACACCTGGGCTTCTCAGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTGCCCCGAGGCCTGTGCGCCTGGTCAGGGTCACCTATGTGTCCAGCGAGGGTGGACACTCGGGGCAGACAGAGGCTCCTGGGAACGCCACCTCGGCCACGCTGGGGCCTCTCTCTTCCTCCACCACCTACACTGTCCGTGTCACCTGCCTCTACCCTGGGGGTGGCTCCTCTACGCTGACTGGCCGGGTGACCACCAAGAAAGCTCCCAGCCCAAGCCAGCTGTCCATGACGGAGCTGCCAGGGGATGCAGTCCAGCTGGCGTGGGTGGCCGCAGCCCCGTCTGGCGTGCTTGTCTACCAGATCACGTGGACGCCCCTGGGAGAGGGGAAGGCTCACGAGATCTCTGTCCCAGGGAACCTCGGCACGGCCGTCCTGCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCTTGGCCTACTACAGGGACGGGGCCCGCAGTGACCCTGTGTCCCTCCGCTATACCCCCTCCACGGTGAGCAGGAGCCCACCCTCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAGCCTGCAGGTCAGCTGGACGCCCCCGCTTGGCCGCGTGCTCCATTACTGGCTCACCTACGCCCCCGCCTCTGGCTTGGGACCCGAGAAATCCGTCTCTGTGCCAGGAGCCAGGAGCCACGTGACACTGCCCGACCTGCAGGCAGCCACGAAGTACAGGGTCCTGGTCTCAGCTATCTATGCAGCAGGCAGGAGTGAGGCTGTGTCTGCCACGGGCCAGACAGCCTGCCCAGCCCTCCGCCCTGACGGCTCCCTCCCAGGGTTTGACCTGATGGTGGCCTTCAGCCTGGTGGAAAAGGCTTATGCGTCCATCCGGGGCGTGGCCATGGAGCCCTCTGCCTTCGGTGGGACCCCGACCTTCACGCTCTTCAAGGACGCCCAGCTGACAAGACGGGTCAGTGACGTCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCCCTCCTTGGGGTTCTGCTGGATGCCGGGAAGAAGTCCCTGACCTACTTCCACCGTGACCCCAGGGCTGCCTTGCAGGAGGCCACCTTCGACCCGCAGGAAGTGAGGAAGATTTTCTTCGGGAGCTTCCACAAGGTGCACGTGGCTGTGGGCCGCTCCAAGGTCAGGCTCTATGTGGACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGGCAGCCCACCCGCTGCGGGCTTCGTCACGCTGGGGAGGCTGGCCAAGGCCAGGGGCCCCCGGAGCAGTTCGGCCGCGTTTCAGCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCCTCGAGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAGGACCTCAAGGACCCCCAGGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCCCAGGGGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGCTTCCAGGCTTGCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGAGAGTTGGCCTCCAGGGACCAAAGGGAATGAGAGGCCTGGAGGGAACTGCTGGCCTGCCTGGACCCCCTGGCCCCAGGGGGTTCCAGGGCATGGCAGGGGCCAGGGGCACTAGTGGAGAGCGAGGACCTCCAGGGACCGTGGGGCCCACAGGACTGCCAGGGCCCAAAGGGGAACGAGGAGAGAAGGGCGAGCCGCAGTCCCTTGCCACCCTCTACCAGCTTGTGAGCCAGGCCTCACACGTGTCAAAGTTCGACTCCTTCCACGAGAACACCAGGCCCCCCATGCCCATCTTGGAGCAGAAGCTGGAGCCGGGCACTGAGCCCCTGGGGTCCCCTGGCACCCGCAGCAAGGCCCTGGTTCCTGGAGAATGGGGGCGTGGTGGCCGCCACCTTGAGGGCAGAGGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCAGGGCCTCTGGGAGTGA
Amino sequence
MSSGDPAHLGLCLWLWLGATLGREQVQASGLLRLAVLPEDRLQMKWRESEGSGLGYLVQVKPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTGSGRFLLARREFVIEDLKSSSLDRSSQRPLGSGAPEPTPSHTGSPDPEQASEPQVAFTPSQDPRTPAGPQFRCLPPVPADMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLSRLICQRLQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWRASRGGTPREVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLGEGKAHEISVPGNLGTAVLPGLGRHTEYDVTILAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSLPGFDLMVAFSLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVYPAPLPPEHTIVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGKKSLTYFHRDPRAALQEATFDPQEVRKIFFGSFHKVHVAVGRSKVRLYVDCRKVAERPLGEMGSPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQASHVSKFDSFHENTRPPMPILEQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGRGEPGAVGQMGSPGQQGASTQGLWE*