ENST00000358894.11 COL20A1

Information
Transcript ID
ENST00000358894.11
Genome
hg38
Position
chr20:63,293,186-63,334,806
Strand
+
CDS length
3,855
Amino acid length
1,285
Gene symbol
COL20A1
Gene type
protein-coding
Gene description
collagen type XX alpha 1 chain
Gene Entrez Gene ID
57642
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 63,293,186 63,293,275
2 63,295,098 63,295,189
3 63,297,910 63,298,020
4 63,305,417 63,305,560
5 63,305,881 63,306,039
6 63,307,490 63,307,648
7 63,307,971 63,308,090
8 63,308,542 63,308,706
9 63,309,333 63,309,497
10 63,309,758 63,309,915
11 63,310,381 63,310,510
12 63,311,394 63,311,539
13 63,311,625 63,311,748
14 63,311,916 63,312,055
15 63,312,420 63,312,549
16 63,312,792 63,312,934
17 63,313,117 63,313,249
18 63,313,743 63,313,891
19 63,314,072 63,314,201
20 63,315,404 63,315,439
21 63,316,553 63,316,691
22 63,319,058 63,319,200
23 63,319,487 63,319,596
24 63,320,039 63,320,197
25 63,320,291 63,320,368
26 63,321,013 63,321,099
27 63,322,058 63,322,111
28 63,325,441 63,325,494
29 63,325,668 63,325,721
30 63,326,096 63,326,149
31 63,326,752 63,326,823
32 63,327,952 63,327,987
33 63,328,079 63,328,127
34 63,328,331 63,328,498
35 63,329,585 63,329,661
36 63,330,720 63,334,806
CDS
Exon number Type Start Stop
2 CDS 63,295,108 63,295,189
3 CDS 63,297,910 63,298,020
4 CDS 63,305,417 63,305,560
5 CDS 63,305,881 63,306,039
6 CDS 63,307,490 63,307,648
7 CDS 63,307,971 63,308,090
8 CDS 63,308,542 63,308,706
9 CDS 63,309,333 63,309,497
10 CDS 63,309,758 63,309,915
11 CDS 63,310,381 63,310,510
12 CDS 63,311,394 63,311,539
13 CDS 63,311,625 63,311,748
14 CDS 63,311,916 63,312,055
15 CDS 63,312,420 63,312,549
16 CDS 63,312,792 63,312,934
17 CDS 63,313,117 63,313,249
18 CDS 63,313,743 63,313,891
19 CDS 63,314,072 63,314,201
20 CDS 63,315,404 63,315,439
21 CDS 63,316,553 63,316,691
22 CDS 63,319,058 63,319,200
23 CDS 63,319,487 63,319,596
24 CDS 63,320,039 63,320,197
25 CDS 63,320,291 63,320,368
26 CDS 63,321,013 63,321,099
27 CDS 63,322,058 63,322,111
28 CDS 63,325,441 63,325,494
29 CDS 63,325,668 63,325,721
30 CDS 63,326,096 63,326,149
31 CDS 63,326,752 63,326,823
32 CDS 63,327,952 63,327,987
33 CDS 63,328,079 63,328,127
34 CDS 63,328,331 63,328,498
35 CDS 63,329,585 63,329,658
Other genome
Genome Chromosome Start End Links
hg19 chr20 61,924,538 61,966,158 Link
CDS sequence
ATGAGCTCCGGAGACCCTGCACACCTCGGCCTCTGCCTCTGGCTGTGGCTGGGCGCCACCCTGGGAAGAGAGCAAGTTCAAGCAAGCGGTCTCCTGAGGCTGGCTGTGCTGCCTGAGGACCGGCTGCAGATGAAGTGGAGAGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCCCATGGCAGGGGACTCGGAACAGGAGGTGATACTGACCACCAAGACCCCTAAGGCCACAGTGGGGGGCCTGAGCCCCTCCAAGGGCTACACCTTGCAGATCTTCGAGCTCACTGGCTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGATTGAGGATCTGAAGAGTAGCTCCCTGGACAGGAGCAGCCAGAGGCCCCTCGGCTCTGGAGCCCCGGAGCCCACCCCCTCCCACACGGGGAGCCCAGACCCTGAGCAGGCTTCTGAGCCCCAAGTTGCCTTCACACCAAGCCAGGATCCGCGCACTCCTGCCGGCCCCCAGTTCCGCTGCCTGCCCCCCGTGCCTGCTGACATGGTCTTCCTGGTGGACGGGTCCTGGAGCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTGGCCAGTGTCATCGCACCCTTTGAAATCGGGCCGGATAAGGTCCAAGTAGGCCTGACTCAGTACAGCGGGGATGCTCAGACTGAGTGGGACCTGAACTCCCTCAGCACCAAGGAACAGGTGCTGGCAGCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTTCACAGGCCTTGCCCTGACCCACGTGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCAGAGGCAGCCAAGGTGGTGATTCTGGTGACGGACGGCAAGTCCCAGGACGATGTGCACACTGCTGCCCGTGTCCTCAAGGACCTGGGCGTGAACGTCTTCGCTGTGGGTGTGAAGAACGCCGATGAGGCTGAGCTGAGGCTCCTGGCGTCCCCGCCGAGGGACATCACCGTCCACAGCGTGCTGGACTTCCTGCAGCTCGGCGCGCTGGCTGGCCTGCTCAGCCGTCTCATCTGCCAGAGGCTCCAGGGTGGGAGCCCGCGGCAGGGCCCAGCAGCGGCTCCAGCCCTGGACACCCTCCCTGCCCCCACCAGCCTGGTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTGGACTCCAGCCCCCCGGCACCCCCTCAAGTATCTGATCGTTTGGCGAGCCTCTAGAGGTGGCACCCCCAGGGAGGTGGTGGTGGAGGGACCCGCCGCCTCCACGGAGCTGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGGCCTGGTGACCACAGCACCTCTGCCTCCGCCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGTCCACCTCACCTGGCAGCCCTCGGCCGGGGCCACCCACTACCTGGTGCGATGTTCTCCTGCTTCCCCCAAGGGTGAAGAGGAGGAGCGAGAGGTGCAGGTCGGGCGGCCCGAGGTGCTGCTGGATGGCCTGGAACCTGGCAGGGACTATGAGGTCTCGGTGCAGAGCCTGCGAGGCCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCCCCACCCTGGCCCCCCCGAGACACCTGGGCTTCTCAGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTGCCCCGAGGCCTGTGCGCCTGGTCAGGGTCACCTATGTGTCCAGCGAGGGTGGACACTCGGGGCAGACAGAGGCTCCTGGGAACGCCACCTCGGCCACGCTGGGGCCTCTCTCTTCCTCCACCACCTACACTGTCCGTGTCACCTGCCTCTACCCTGGGGGTGGCTCCTCTACGCTGACTGGCCGGGTGACCACCAAGAAAGCTCCCAGCCCAAGCCAGCTGTCCATGACGGAGCTGCCAGGGGATGCAGTCCAGCTGGCGTGGGTGGCCGCAGCCCCGTCTGGCGTGCTTGTCTACCAGATCACGTGGACGCCCCTGGGAGAGGGGAAGGCTCACGAGATCTCTGTCCCAGGGAACCTCGGCACGGCCGTCCTGCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCTTGGCCTACTACAGGGACGGGGCCCGCAGTGACCCTGTGTCCCTCCGCTATACCCCCTCCACGGTGAGCAGGAGCCCACCCTCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAGCCTGCAGGTCAGCTGGACGCCCCCGCTTGGCCGCGTGCTCCATTACTGGCTCACCTACGCCCCCGCCTCTGGCTTGGGACCCGAGAAATCCGTCTCTGTGCCAGGAGCCAGGAGCCACGTGACACTGCCCGACCTGCAGGCAGCCACGAAGTACAGGGTCCTGGTCTCAGCTATCTATGCAGCAGGCAGGAGTGAGGCTGTGTCTGCCACGGGCCAGACAGCCTGCCCAGCCCTCCGCCCTGACGGCTCCCTCCCAGGGTTTGACCTGATGGTGGCCTTCAGCCTGGTGGAAAAGGCTTATGCGTCCATCCGGGGCGTGGCCATGGAGCCCTCTGCCTTCGGTGGGACCCCGACCTTCACGCTCTTCAAGGACGCCCAGCTGACAAGACGGGTCAGTGACGTCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCCCTCCTTGGGGTTCTGCTGGATGCCGGGAAGAAGTCCCTGACCTACTTCCACCGTGACCCCAGGGCTGCCTTGCAGGAGGCCACCTTCGACCCGCAGGAAGTGAGGAAGATTTTCTTCGGGAGCTTCCACAAGGTGCACGTGGCTGTGGGCCGCTCCAAGGTCAGGCTCTATGTGGACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGGCAGCCCACCCGCTGCGGGCTTCGTCACGCTGGGGAGGCTGGCCAAGGCCAGGGGCCCCCGGAGCAGTTCGGCCGCGTTTCAGCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCCTCGAGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAGGACCTCAAGGACCCCCAGGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCCCAGGGGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGCTTCCAGGCTTGCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGAGAGTTGGCCTCCAGGGACCAAAGGGAATGAGAGGCCTGGAGGGAACTGCTGGCCTGCCTGGACCCCCTGGCCCCAGGGGGTTCCAGGGCATGGCAGGGGCCAGGGGCACTAGTGGAGAGCGAGGACCTCCAGGGACCGTGGGGCCCACAGGACTGCCAGGGCCCAAAGGGGAACGAGGAGAGAAGGGCGAGCCGCAGTCCCTTGCCACCCTCTACCAGCTTGTGAGCCAGGCCTCACACGTGTCAAAGTTCGACTCCTTCCACGAGAACACCAGGCCCCCCATGCCCATCTTGGAGCAGAAGCTGGAGCCGGGCACTGAGCCCCTGGGGTCCCCTGGCACCCGCAGCAAGGCCCTGGTTCCTGGAGAATGGGGGCGTGGTGGCCGCCACCTTGAGGGCAGAGGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCAGGGCCTCTGGGAGTGA
Amino sequence
MSSGDPAHLGLCLWLWLGATLGREQVQASGLLRLAVLPEDRLQMKWRESEGSGLGYLVQVKPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTGSGRFLLARREFVIEDLKSSSLDRSSQRPLGSGAPEPTPSHTGSPDPEQASEPQVAFTPSQDPRTPAGPQFRCLPPVPADMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLSRLICQRLQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWRASRGGTPREVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLGEGKAHEISVPGNLGTAVLPGLGRHTEYDVTILAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSLPGFDLMVAFSLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVYPAPLPPEHTIVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGKKSLTYFHRDPRAALQEATFDPQEVRKIFFGSFHKVHVAVGRSKVRLYVDCRKVAERPLGEMGSPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQASHVSKFDSFHENTRPPMPILEQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGRGEPGAVGQMGSPGQQGASTQGLWE*