ENST00000360565.8 SCAF1

Information
Transcript ID
ENST00000360565.8
Genome
hg19
Position
chr19:50,145,466-50,161,899
Strand
+
CDS length
3,939
Amino acid length
1,313
Gene symbol
SCAF1
Gene type
protein-coding
Gene description
SR-related CTD associated factor 1
Gene Entrez Gene ID
58506
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 50,145,466 50,145,499
2 50,148,278 50,148,391
3 50,148,611 50,148,668
4 50,149,365 50,149,459
5 50,149,783 50,149,883
6 50,149,972 50,150,087
7 50,154,125 50,156,962
8 50,157,606 50,157,688
9 50,157,909 50,158,127
10 50,161,018 50,161,146
11 50,161,465 50,161,899
CDS
Exon number Type Start Stop
2 CDS 50,148,284 50,148,391
3 CDS 50,148,611 50,148,668
4 CDS 50,149,365 50,149,459
5 CDS 50,149,783 50,149,883
6 CDS 50,149,972 50,150,087
7 CDS 50,154,125 50,156,962
8 CDS 50,157,606 50,157,688
9 CDS 50,157,909 50,158,127
10 CDS 50,161,018 50,161,146
11 CDS 50,161,465 50,161,656
Other genome
Genome Chromosome Start End Links
hg38 chr19 49,642,209 49,658,642 Link
CDS sequence
ATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGTCGGGGGAGGATCGGGGCGATGGTCCGCCAGACAGAGACCCCACGCTTTCTCCTTCTGCCTTTATCCTGCGAGCCATCCAGCAGGCTGTGGGAAGCTCCCTGCAGGGGGACCTGCCCAATGATAAAGATGGCTCTCGGTGTCATGGCCTTCGATGGCGGCGCTGCCGGAGTCCACGGTCAGAGCCCCGTTCCCAGGAATCAGGGGGCACTGACACGGCTACTGTGTTGGACATGGCCACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGGATCCCCCGGATACCTGGGTTCCCAGCCGCCTGGACCTGCGGCCTGGCGAAAGTGAGGACATGCTGGAGCTGGTGGCTGAGGTCCGAATCGGGGACAGAGATCCCATCCCTCTGCCTGTGCCCAGCCTGCTGCCCCGTCTCAGGGCCTGGAGGACGGGCAAAACGGTTTCTCCACAGTCGAACTCCTCTAGGCCCACCTGTGCCCGTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGCCCCACCCCCTGCCCCCTCCTCTGCATCCTCCTCCCCTTCCCCTTCTCCCTCATCTTCCTCCCCTTCCCCTCCCCCACCCCCACCGCCCCCTGCACCCCCAGCCCCACCTGCCCCCCGATTCGATATCTATGACCCCTTCCACCCCACCGACGAGGCCTACTCTCCACCGCCTGCTCCGGAGCAAAAGTACGACCCTTTTGAGCCCACCGGCTCCAACCCCAGCTCATCAGCGGGGACCCCCTCACCTGAGGAGGAAGAGGAGGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGACGAGGAGGAGGAGGAAGGCCTGTCCCAGAGCATCAGCCGCATCTCGGAGACCCTGGCGGGCATCTACGATGACAACAGCCTGAGCCAGGACTTCCCAGGTGACGAGAGCCCCCGCCCGGACGCGCAGCCCACACAGCCGACTCCCGCCCCTGGAACGCCGCCCCAGGTGGACTCCACCCGGGCTGATGGAGCCATGCGCCGGCGGGTCTTCGTGGTGGGGACCGAGGCAGAGGCTTGTCGGGAAGGCAAGGTCTCGGTGGAGGTGGTGACCGCTGGTGGAGCCGCCCTCCCGCCGCCCCTGCTGCCGCCCGGCGACTCGGAGATCGAGGAAGGGGAGATCGTCCAGCCGGAGGAGGAGCCCAGGCTGGCGCTGTCCCTCTTCCGCCCCGGCGGCCGGGCCGCCCGGCCTACACCGGCCGCCTCGGCCACCCCCACGGCCCAGCCCCTTCCTCAGCCTCCCGCTCCGCGGGCCCCCGAGGGGGACGACTTCTTGTCCCTGCATGCGGAGTCGGACGGCGAGGGCGCCCTGCAGGTGGACCTAGGGGAGCCGGCTCCCGCGCCGCCCGCCGCCGACTCGCGCTGGGGCGGCCTGGACCTGCGCCGCAAGATCCTGACCCAACGGCGGGAGCGCTACCGCCAGCGCTCGCCCTCCCCGGCGCCCGCGCCCGCCCCGGCCGCCGCTGCTGGTCCGCCCACGCGCAAGAAGTCCAGGCGGGAACGCAAGCGCAGCGGCGAGGCCAAGGAGGCCGCCTCGTCCTCGTCGGGCACCCAGCCAGCGCCGCCCGCCCCGGCCTCGCCCTGGGACTCCAAGAAGCACCGCTCGCGGGACCGCAAGCCCGGCTCCCACGCCTCGTCGTCCGCCCGCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCACCCGCCGCCGCTCGCGCAGCACCGACCGCCGCCGCGGGGGCAGCCGCAGGTCGCGGTCCCGGGAGAAGCGGCGACGGCGGCGGCGCTCCGCCTCCCCGCCCCCGGCCACTTCCTCATCGTCGTCCTCGAGGCGCGAGCGGCACCGCGGGAAACACCGGGACGGTGGCGGCAGCAAGAAGAAGAAGAAGCGGTCGCGGTCCCGGGGTGAGAAGCGGTCTGGGGATGGCAGCGAGAAGGCCCCGGCGCCCGCCCCGCCGCCCTCTGGCTCCACCTCGTGTGGTGACCGCGACAGCCGCCGCCGGGGGGCCGTGCCACCCTCCATCCAGGACCTCACGGACCACGACCTCTTCGCCATCAAGCGGACCATCACGGTGGGCCGGCTTGACAAGTCCGACCCCCGAGGACCCTCTCCTGCTCCGGCCTCCTCACCTAAGCGGGAGGTCCTGTACGACTCCGAGGGACTGAGCGGCGAGGAGCGGGGCGGCAAGAGCAGCCAGAAGGATCGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTCCTCTTCCCGGGAGAAGGGGTCTCGTCGGAAGGCGCTGGACGGGGGTGACCGGGATCGGGACAGGGACAGAGATAGGGACAGGGACAGGTCATCCAAGAAGGCCCGGCCCCCCAAGGAGTCGGCGCCTTCCTCAGGGCCCCCGCCAAAGCCACCAGTCAGCAGCGGCTCAGGCTCTTCATCCTCGTCGTCCTCCTGTTCTTCCCGGAAGGTGAAGCTGCAGTCCAAGGTGGCGGTGCTGATCCGCGAGGGTGTCAGCAGCACCACCCCGGCCAAGGATGCCGCGTCAGCCGGCCTGGGCTCCATTGGCGTCAAATTCAGCCGTGACCGCGAGAGTCGCTCCCCCTTCCTCAAACCTGACGAGCGGGCCCCCACTGAGATGGCCAAAGCAGCTCCGGGCAGCACCAAGCCCAAAAAGACCAAGGTCAAGGCCAAGGCAGGGGCCAAGAAAACCAAGGGGACCAAGGGAAAGACCAAGCCATCCAAGACCAGGAAAAAGGTCCGCAGTGGAGGTGGCAGCGGGGGCAGTGGTGGCCAGGTGTCGCTGAAGAAGTCCAAGGCGGATAGCTGCAGCCAGGCGGCAGGCACCAAGGGGGCGGAGGAGACTTCCTGGTCCGGGGAGGAGCGGGCAGCCAAGGTTCCTAGCACCCCGCCCCCCAAGGCAGCCCCACCACCCCCTGCCCTCACTCCGGACTCGCAGACCGTGGACAGCAGCTGCAAGACACCTGAGGTCTCCTTCCTGCCCGAGGAGGCCACTGAGGAGGCTGGGGTCCGAGGTGGGGCGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGCAGCAGCCTGCTACCACCACGGCCACCAGCACTGCTGCAGCCGCCCCAAGCACTGCCCCCAGCGCGGGGTCCACAGCCGGTGACTCGGGGGCGGAGGACGGGCCAGCTTCCCGTGTCTCCCAGCTGCCCACGTTGCCCCCGCCCATGCCCTGGAATCTGCCAGCTGGTGTGGACTGCACCACCAGCGGCGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGAAGCCAACCTGGCGAGCCGAGCGAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGATCCTCAGCCACAGAAAGCCACCCTCAAGTCTGGGGATGACCCCAGCTCCTGTGCCCACCTCTTTGGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTTCCTGGCAGCCTCCCTCTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCTGGCTGCCACGTCTGACAAGAGAGAGGGCAGCAGCAGCTCTGAGGGCCGTGGGGACACAGATAAGTATCTGAAGAAGCTGCACACGCAGGAGCGGGCGGTGGAGGAGGTGAAGCTGGCCATCAAGCCATACTATCAGAAGAAGGACATCACCAAGGAGGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAGTGGGGAAATCAACCCAGTGAAGGTGAGCAACCTGGTGCGGGCCTACGTCCAGCGCTACCGCTACTTCCGCAAGCACGGTCGCAAGCCAGGGGACCCCCCAGGGCCCCCACGGCCGCCCAAGGAGCCAGGGCCCCCAGACAAGGGTGGCCCGGGCCTGCCCCTGCCCCCTCTCTGA
Amino sequence
MEEEDESRGKTEESGEDRGDGPPDRDPTLSPSAFILRAIQQAVGSSLQGDLPNDKDGSRCHGLRWRRCRSPRSEPRSQESGGTDTATVLDMATDSFLAGLVSVLDPPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAPGTPPQVDSTRADGAMRRRVFVVGTEAEACREGKVSVEVVTAGGAALPPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVKAKAGAKKTKGTKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAEETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKPPSSLGMTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAATSDKREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL*