ENST00000602212.6 NPAS1

Information
Transcript ID
ENST00000602212.6
Genome
hg19
Position
chr19:47,523,094-47,549,033
Strand
+
CDS length
1,773
Amino acid length
591
Gene symbol
NPAS1
Gene type
protein-coding
Gene description
neuronal PAS domain protein 1
Gene Entrez Gene ID
4861
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 47,523,094 47,523,254
2 47,524,263 47,524,426
3 47,524,869 47,525,104
4 47,535,536 47,535,609
5 47,535,901 47,535,990
6 47,539,222 47,539,387
7 47,542,294 47,542,409
8 47,542,665 47,542,822
9 47,543,702 47,543,808
10 47,544,236 47,544,383
11 47,546,068 47,546,162
12 47,548,449 47,549,033
CDS
Exon number Type Start Stop
2 CDS 47,524,305 47,524,426
3 CDS 47,524,869 47,525,104
4 CDS 47,535,536 47,535,609
5 CDS 47,535,901 47,535,990
6 CDS 47,539,222 47,539,387
7 CDS 47,542,294 47,542,409
8 CDS 47,542,665 47,542,822
9 CDS 47,543,702 47,543,808
10 CDS 47,544,236 47,544,383
11 CDS 47,546,068 47,546,162
12 CDS 47,548,449 47,548,909
Other genome
Genome Chromosome Start End Links
hg38 chr19 47,019,837 47,045,775 Link
CDS sequence
ATGGCGGCCCCCTATCCCGGCAGTGGCGGCGGAAGCGAGGTCAAATGCGTGGGAGGCCGCGGCGCCAGCGTCCCCTGGGACTTTCTACCCGGGCTGATGGTCAAGGCGCCGTCCGGACCGTGCCTGCAGGCGCAGCGCAAGGAGAAGTCCCGGAACGCGGCGCGCTCGCGGCGCGGGAAGGAGAACCTGGAGTTCTTCGAGCTGGCCAAGCTTCTCCCGCTGCCCGGCGCCATCTCCAGCCAGCTGGACAAGGCTTCCATCGTGCGCCTCAGCGTCACCTACCTCCGCCTGCGCCGGTTCGCCGCGCTGGGGGCGCCGCCCTGGGGGCTGAGAGCCGCGGGGCCGCCAGCTGGCCTCGCCCCAGGCCGCCGCGGCCCCGCAGCGCTGGTCTCCGAAGTCTTCGAGCAGCACCTGGGAGGTCACATCTTGCAGTCCCTGGATGGCTTTGTGTTCGCCTTGAACCAGGAAGGAAAATTCCTCTACATCTCAGAGACAGTCTCCATCTATCTGGGTCTCTCACAGGTGGAGATGACGGGCAGCAGCGTCTTCGACTACATTCACCCTGGGGACCACTCAGAGGTGCTGGAGCAACTGGGGCTGCGGACGCCGACGCCCGGCCCCCCAACCCCGCCCTCCGTCTCCTCTTCCTCCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGA
Amino sequence
MAAPYPGSGGGSEVKCVGGRGASVPWDFLPGLMVKAPSGPCLQAQRKEKSRNAARSRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRAAGPPAGLAPGRRGPAALVSEVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADTPEIEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPGTIRYGPAELGLVYPHLQRLGPGPALPEAFYPPLGLPYPGPAGTRLPRKGD*