ENST00000270066.11 SMG9
Information
- Transcript ID
- ENST00000270066.11
- Genome
- hg19
- Position
- chr19:44,232,135-44,259,114
- Strand
- -
- CDS length
- 1,563
- Amino acid length
- 521
- Gene symbol
- SMG9
- Gene type
- protein-coding
- Gene description
- SMG9 nonsense mediated mRNA decay factor
- Gene Entrez Gene ID
- 56006
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 14 | 44,232,135 | 44,235,826 |
| 13 | 44,237,010 | 44,237,154 |
| 12 | 44,237,476 | 44,237,604 |
| 11 | 44,237,778 | 44,237,885 |
| 10 | 44,238,541 | 44,238,647 |
| 9 | 44,241,749 | 44,241,834 |
| 8 | 44,242,274 | 44,242,369 |
| 7 | 44,244,259 | 44,244,370 |
| 6 | 44,248,924 | 44,249,036 |
| 5 | 44,251,594 | 44,251,691 |
| 4 | 44,251,785 | 44,252,049 |
| 3 | 44,252,130 | 44,252,204 |
| 2 | 44,254,744 | 44,254,899 |
| 1 | 44,258,806 | 44,259,114 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 14 | CDS | 44,235,748 | 44,235,826 |
| 13 | CDS | 44,237,010 | 44,237,154 |
| 12 | CDS | 44,237,476 | 44,237,604 |
| 11 | CDS | 44,237,778 | 44,237,885 |
| 10 | CDS | 44,238,541 | 44,238,647 |
| 9 | CDS | 44,241,749 | 44,241,834 |
| 8 | CDS | 44,242,274 | 44,242,369 |
| 7 | CDS | 44,244,259 | 44,244,370 |
| 6 | CDS | 44,248,924 | 44,249,036 |
| 5 | CDS | 44,251,594 | 44,251,691 |
| 4 | CDS | 44,251,785 | 44,252,049 |
| 3 | CDS | 44,252,130 | 44,252,204 |
| 2 | CDS | 44,254,744 | 44,254,893 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr19 | 43,727,983 | 43,754,962 | Link |
CDS sequence
ATGTCTGAGTCTGGACACAGTCAGCCTGGACTCTATGGGATAGAGCGGCGGCGACGGTGGAAGGAGCCTGGCTCTGGTGGCCCCCAGAATCTCTCTGGGCCTGGTGGTCGGGAGAGGGACTACATTGCACCATGGGAAAGAGAGAGAAGGGATGCCAGCGAAGAGACAAGCACTTCCGTCATGCAGAAAACCCCCATCATCCTCTCAAAACCTCCAGCAGAGCGGTCAAAACAGCCACCACCTCCAACAGCCCCTGCTGCCCCGCCTGCTCCAGCCCCTCTGGAGAAGCCCATCGTTCTCATGAAGCCACGGGAGGAGGGGAAGGGGCCTGTGGCCGTGACAGGTGCCTCTACCCCTGAGGGCACCGCCCCACCACCCCCTGCAGCCCCTGCGCCACCCAAGGGGGAGAAGGAGGGGCAGAGACCCACACAGCCTGTGTACCAGATCCAGAACCGGGGCATGGGCACTGCCGCACCAGCAGCCATGGACCCTGTCGTGGGTCAGGCCAAACTACTGCCCCCAGAGCGCATGAAGCACAGCATCAAGTTGGTGGATGACCAGATGAATTGGTGTGACAGTGCCATCGAGTACCTGTTGGATCAGACTGATGTGTTGGTGGTTGGTGTCCTGGGCCTCCAGGGGACAGGCAAGTCCATGGTCATGTCATTGTTGTCAGCCAACACTCCAGAGGAGGACCAGAGGACTTATGTTTTCCGGGCCCAGAGCGCTGAAATGAAGGAACGAGGGGGCAACCAGACCAGTGGCATCGACTTCTTTATTACCCAAGAACGGATTGTTTTCCTGGACACACAGCCCATCCTGAGCCCTTCTATCCTAGACCATCTCATCAATAATGACCGCAAACTGCCTCCAGAGTACAACCTTCCCCACACTTACGTTGAAATGCAGTCACTCCAGATTGCTGCCTTCCTTTTCACGGTCTGCCATGTGGTGATTGTTGTCCAGGACTGGTTCACAGACCTCAGTCTCTACAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCCACGAGTCCAGCAGCTCATCGGGCTCCGATGAAGGCACCGAGTACTACCCCCACCTAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTGCGGCAGATGCACCTGATGATTGACCAGCTCATGGCCCACTCCCACCTGCGTTACAAGGGAACTCTGTCCATGTTACAATGCAATGTCTTCCCGGGGCTTCCACCTGACTTCCTGGACTCTGAGGTCAACTTATTCCTGGTACCCTTCATGGACAGTGAAGCAGAGAGTGAAAACCCACCAAGAGCAGGACCTGGTTCCAGCCCACTCTTCTCCCTGCTGCCTGGGTATCGTGGCCACCCCAGTTTCCAGTCCTTGGTGAGCAAGCTCCGGAGCCAAGTGATGTCCATGGCCCGGCCACAGCTGTCACACACGATCCTCACCGAGAAGAACTGGTTCCACTACGCTGCCCGGATCTGGGATGGGGTGAGAAAGTCCTCTGCTCTGGCAGAGTACAGCCGCCTGCTGGCCTGA
Amino sequence
MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSVMQKTPIILSKPPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPEGTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVRKSSALAEYSRLLA*