ENST00000488454.5 SKA1
Information
- Transcript ID
- ENST00000488454.5
- Genome
- hg19
- Position
- chr18:47,901,416-47,918,621
- Strand
- +
- CDS length
- 315
- Amino acid length
- 105
- Gene symbol
- SKA1
- Gene type
- protein-coding
- Gene description
- spindle and kinetochore associated complex subunit 1
- Gene Entrez Gene ID
- 220134
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 47,901,416 | 47,901,564 |
| 2 | 47,902,190 | 47,902,288 |
| 3 | 47,908,499 | 47,908,596 |
| 4 | 47,917,494 | 47,917,663 |
| 5 | 47,918,469 | 47,918,621 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 4 | CDS | 47,917,498 | 47,917,663 |
| 5 | CDS | 47,918,469 | 47,918,617 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr18 | 50,375,046 | 50,392,251 | Link |
CDS sequence
ATGAAATCCCGCTTAACCTATAATCAAATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAATTAGTAAATATAAAATCCTACATCAGCCAAAAAAGTCTATGAATTCTGTGACCAGAAATCTCTATCACAGATTTATTGATGAAGAAACGAAGGATACCAAAGGTCGTTATTTTATAGTGGAAGCTGACATAAAGGAGTTCACAACTTTGAAAGCTGACAAGAAGTTTCACGTGTTACTGAATATTTTACGACACTGCCGGAGGCTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA
Amino sequence
MKSRLTYNQINDVIKEINKAVISKYKILHQPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKEFTTLKADKKFHVLLNILRHCRRLSEVRGGGLTRYVIT*