ENST00000580437.5 SECTM1

Information
Transcript ID
ENST00000580437.5
Genome
hg19
Position
chr17:80,279,763-80,291,638
Strand
-
CDS length
450
Amino acid length
150
Gene symbol
SECTM1
Gene type
protein-coding
Gene description
secreted and transmembrane 1
Gene Entrez Gene ID
6398
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
5 80,279,763 80,280,246
4 80,280,754 80,280,781
3 80,282,458 80,282,766
2 80,285,023 80,285,168
1 80,291,576 80,291,638
CDS
Exon number Type Start Stop
5 CDS 80,280,228 80,280,246
4 CDS 80,280,754 80,280,781
3 CDS 80,282,458 80,282,766
2 CDS 80,285,023 80,285,116
Other genome
Genome Chromosome Start End Links
hg38 chr17 82,321,887 82,333,762 Link
CDS sequence
ATGCAGACCTGCCCCCTGGCATTCCCTGGCCACGTTTCCCAGGCCCTTGGGACCCTCCTGTTTTTGGCTGCCTCCTTGAGTGCTCAGAATGAAGGCTGGGACAGCCCCATCTGCACAGAGGGGGTAGTCTCTGTGTCTTGGGGCGAGAACACCGTCATGTCCTGCAACATCTCCAACGCCTTCTCCCATGTCAACATCAAGCTGCGTGCCCACGGGCAGGAGAGCGCCATCTTCAATGAGGTGGCTCCAGGCTACTTCTCCCGGGACGGCTGGCAGCTCCAGGTTCAGGGAGGCGTGGCACAGCTGGTGATCAAAGGCGCCCGGGACTCCCATGCTGGGCTGTACATGTGGCACCTCGTGGGACACCAGAGAAATAACAGACAAGTCACGCTGGAGGTTTCAGGTGCCGCTGTTCCCAGCAACGCCGGGAGAAGAAGTTCTTCCTCCTAG
Amino sequence
MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNAFSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLVGHQRNNRQVTLEVSGAAVPSNAGRRSSSS*