ENST00000309894.6 CSHL1

Information
Transcript ID
ENST00000309894.6
Genome
hg19
Position
chr17:61,986,968-61,988,618
Strand
-
CDS length
669
Amino acid length
223
Gene symbol
CSHL1
Gene type
protein-coding
Gene description
chorionic somatomammotropin hormone like 1
Gene Entrez Gene ID
1444
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
5 61,986,968 61,987,268
4 61,987,522 61,987,686
3 61,987,780 61,987,895
2 61,988,105 61,988,284
1 61,988,547 61,988,618
CDS
Exon number Type Start Stop
5 CDS 61,987,071 61,987,268
4 CDS 61,987,522 61,987,686
3 CDS 61,987,780 61,987,895
2 CDS 61,988,105 61,988,284
1 CDS 61,988,547 61,988,556
Other genome
Genome Chromosome Start End Links
hg38 chr17 63,909,608 63,911,258 Link
CDS sequence
ATGGCTGCAGGCTCCCGGACGTCCCTGCTCCTGGCTTTTGCCCTGCTCTGCCTGCCCTGGCTTCAAGAGGCTGGTGCCGTCCAAACCGTTCCCTTATCCAGGCTTTTTAAAGAGGCTATGCTCCAAGCCCATCGCGCACACCAGCTGGCCATTGACACCTACCAGGAGTTTATAAGCTCTTGGGGAATGGAAGCCTATATCACAAAGGAACAGAAGTATTCATTCCTGCATGACTCCCAGACCTCCTTCTGCTTCTCAGACTCTATTCCGACATCCTCCAACATGGAGGAAACGCAGCAGAAATCCAACTTAGAGCTGCTCCACATCTCCCTGCTGCTCATCGAGTCGCGGCTGGAGCCCGTGCGGTTCCTCAGGAGTACCTTCACCAACAACCTGGTGTATGACACCTCGGACAGCGATGACTATCACCTCCTAAAGGACCTAGAGGAAGGCATCCAAATGCTGATGGGGAGGCTGGAAGACGGCAGCCACCTGACTGGGCAGACCCTCAAGCAGACCTACAGCAAGTTTGACACAAACTCGCACAACCATGACGCACTGCTCAAGAACTACGGGCTGCTCCACTGCTTCAGGAAGGACATGGACAAGGTCGAGACATTCCTGCGCATGGTGCAGTGCCGCTCTGTGGAGGGCAGCTGTGGCTTCTAG
Amino sequence
MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFKEAMLQAHRAHQLAIDTYQEFISSWGMEAYITKEQKYSFLHDSQTSFCFSDSIPTSSNMEETQQKSNLELLHISLLLIESRLEPVRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF*