ENST00000356488.8 SPATA20
Information
- Transcript ID
- ENST00000356488.8
- Genome
- hg19
- Position
- chr17:48,624,487-48,633,213
- Strand
- +
- CDS length
- 2,361
- Amino acid length
- 787
- Gene symbol
- SPATA20
- Gene type
- protein-coding
- Gene description
- spermatogenesis associated 20
- Gene Entrez Gene ID
- 64847
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 48,624,487 | 48,624,646 |
| 2 | 48,625,644 | 48,625,814 |
| 3 | 48,625,915 | 48,625,979 |
| 4 | 48,626,171 | 48,626,325 |
| 5 | 48,626,404 | 48,626,547 |
| 6 | 48,626,647 | 48,626,848 |
| 7 | 48,627,346 | 48,627,476 |
| 8 | 48,627,569 | 48,627,673 |
| 9 | 48,627,897 | 48,627,971 |
| 10 | 48,628,069 | 48,628,278 |
| 11 | 48,628,359 | 48,628,551 |
| 12 | 48,628,872 | 48,629,040 |
| 13 | 48,629,330 | 48,629,541 |
| 14 | 48,631,612 | 48,631,811 |
| 15 | 48,632,593 | 48,632,673 |
| 16 | 48,632,853 | 48,633,213 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 48,624,570 | 48,624,646 |
| 2 | CDS | 48,625,644 | 48,625,814 |
| 3 | CDS | 48,625,915 | 48,625,979 |
| 4 | CDS | 48,626,171 | 48,626,325 |
| 5 | CDS | 48,626,404 | 48,626,547 |
| 6 | CDS | 48,626,647 | 48,626,848 |
| 7 | CDS | 48,627,346 | 48,627,476 |
| 8 | CDS | 48,627,569 | 48,627,673 |
| 9 | CDS | 48,627,897 | 48,627,971 |
| 10 | CDS | 48,628,069 | 48,628,278 |
| 11 | CDS | 48,628,359 | 48,628,551 |
| 12 | CDS | 48,628,872 | 48,629,040 |
| 13 | CDS | 48,629,330 | 48,629,541 |
| 14 | CDS | 48,631,612 | 48,631,811 |
| 15 | CDS | 48,632,593 | 48,632,673 |
| 16 | CDS | 48,632,853 | 48,633,023 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr17 | 50,547,126 | 50,555,852 | Link |
CDS sequence
ATGCTGGGCGCGCGGGCCTGGTTGGGCCGCGTCCTTCTGCTGCCCCGCGCCGGTGCAGGCCTCGCCGCGAGCCGCAGGGGTAGCTCCTCCCGGGACAAGGACCGAAGTGCGACGGTCAGTAGTTCAGTGCCCATGCCTGCTGGAGGGAAAGGAAGCCATCCTTCATCTACACCCCAGAGGGTCCCCAACCGCCTGATCCACGAGAAGTCACCATACCTCCTACAACATGCCTACAATCCTGTGGACTGGTACCCCTGGGGACAGGAAGCCTTCGACAAGGCCAGGAAGGAAAACAAGCCGATTTTCCTCTCAGTCGGGTACTCCACCTGCCACTGGTGCCACATGATGGAAGAGGAGTCCTTCCAGAATGAGGAGATTGGCCGCCTGCTCAGTGAGGACTTTGTGAGTGTGAAGGTAGACCGTGAGGAGCGGCCTGACGTGGACAAGGTGTACATGACGTTCGTGCAGGCCACCAGCAGCGGCGGGGGCTGGCCCATGAATGTGTGGCTGACTCCCAACCTCCAGCCCTTTGTCGGGGGCACCTATTTCCCTCCTGAGGATGGCTTGACCCGAGTCGGCTTCCGCACAGTGTTGCTGAGAATACGAGAACAGTGGAAACAGAACAAGAACACCCTGCTAGAAAATAGCCAGCGTGTCACCACTGCCCTGCTGGCCCGATCAGAGATCAGCGTGGGTGACCGCCAGCTGCCGCCCTCTGCCGCCACCGTGAACAATCGCTGCTTCCAGCAGCTGGATGAGGGCTATGATGAGGAATACGGTGGCTTCGCTGAGGCCCCCAAGTTTCCCACGCCGGTGATCCTGAGCTTCCTGTTCTCCTACTGGCTCAGCCATCGACTGACTCAGGATGGCTCTCGGGCCCAGCAGATGGCCTTGCATACCCTGAAAATGATGGCTAACGGGGGCATCCGGGACCATGTGGGGCAGGGCTTTCACCGCTACTCCACAGACCGCCAGTGGCACGTCCCTCACTTTGAGAAGATGCTCTATGACCAGGCACAGCTCGCTGTGGCCTATTCGCAGGCCTTCCAGCTCTCTGGTGATGAATTCTACTCTGACGTGGCCAAAGGCATCCTGCAGTACGTGGCTCGGAGCCTGAGCCACCGGTCCGGAGGCTTCTATAGCGCAGAAGATGCAGACTCGCCCCCAGAGCGGGGCCAGCGGCCCAAAGAGGGCGCCTACTATGTGTGGACGGTCAAAGAGGTTCAGCAGCTCCTCCCGGAGCCTGTGTTGGGTGCCACCGAGCCGCTGACCTCAGGCCAGCTCCTCATGAAGCACTACGGCCTCACAGAGGCTGGTAACATCAGCCCCAGTCAGGACCCCAAGGGGGAGCTGCAGGGCCAGAATGTGCTGACCGTCCGGTACTCGCTGGAGCTGACTGCTGCCCGCTTTGGCTTGGATGTGGAGGCCGTGCGGACCTTGCTCAATTCAGGGCTGGAGAAGCTCTTCCAGGCCCGGAAGCATCGGCCCAAGCCGCACCTGGACAGCAAGATGCTGGCTGCCTGGAATGGCTTGATGGTGTCAGGCTATGCTGTGACTGGGGCTGTCCTGGGCCAAGACAGGCTGATCAACTATGCCACCAATGGTGCCAAGTTCCTGAAGCGGCACATGTTTGATGTGGCCAGTGGCCGCCTGATGCGGACCTGCTACACCGGCCCTGGGGGGACTGTGGAGCACAGCAACCCACCCTGCTGGGGCTTCCTGGAGGACTACGCCTTCGTGGTGCGGGGCCTGCTGGACCTGTATGAGGCCTCACAGGAGAGTGCGTGGCTCGAGTGGGCTCTGCGGCTGCAGGACACACAGGACAAGCTCTTTTGGGACTCCCAGGGTGGCGGCTACTTCTGCAGTGAGGCTGAGCTGGGGGCTGGCCTGCCCCTGCGTCTGAAGGACGACCAGGATGGAGCAGAGCCCAGCGCCAATTCCGTGTCAGCCCACAACCTGCTCCGGCTGCATGGCTTCACGGGCCACAAGGACTGGATGGACAAGTGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCGTGTCCCGGTGGCGTTGCCCGAGATGGTCCGCGCCCTCTCAGCCCAGCAGCAGACCCTCAAGCAGATCGTGATCTGTGGAGACCGTCAGGCCAAGGACACCAAGGCCCTGGTGCAGTGCGTCCACTCTGTCTACATTCCTAACAAGGTGCTGATTCTGGCTGATGGGGACCCCTCGAGCTTCCTGTCCCGCCAGCTGCCTTTCCTGAGTACCCTCCGACGGTTGGAAGACCAGGCCACTGCATATGTGTGTGAGAATCAAGCCTGCTCAGTGCCCATCACTGATCCCTGCGAATTACGAAAACTACTACATCCATGA
Amino sequence
MLGARAWLGRVLLLPRAGAGLAASRRGSSSRDKDRSATVSSSVPMPAGGKGSHPSSTPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQWKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATVNNRCFQQLDEGYDEEYGGFAEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQLAVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGGFYSAEDADSPPERGQRPKEGAYYVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLTEAGNISPSQDPKGELQGQNVLTVRYSLELTAARFGLDVEAVRTLLNSGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQDRLINYATNGAKFLKRHMFDVASGRLMRTCYTGPGGTVEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDKLFWDSQGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKVLILADGDPSSFLSRQLPFLSTLRRLEDQATAYVCENQACSVPITDPCELRKLLHP*