ENST00000585388.2 LSM12
Information
- Transcript ID
- ENST00000585388.2
- Genome
- hg19
- Position
- chr17:42,113,511-42,144,027
- Strand
- -
- CDS length
- 693
- Amino acid length
- 231
- Gene symbol
- LSM12
- Gene type
- protein-coding
- Gene description
- LSM12 homolog
- Gene Entrez Gene ID
- 124801
Variants
Display target variant
Search Word
Target data | : |
MGeND data only
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Category | : |
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Filtering | : |
Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
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Entry | Origin | Type | Annotation | Entry | Origin | Annotation |
Search Word
Target data | : |
MGeND data only
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Category | : |
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Search word | : | |
Filtering | : |
Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Entry | Origin | Type | Annotation |
Search Word
Target data | : |
MGeND data only
|
Category | : |
|
Search word | : | |
Filtering | : |
Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Entry | Origin | Type | Annotation |
Exon
Exon number | Start | Stop |
---|---|---|
6 | 42,113,511 | 42,113,668 |
5 | 42,114,230 | 42,114,470 |
4 | 42,114,780 | 42,114,906 |
3 | 42,117,515 | 42,117,624 |
2 | 42,141,169 | 42,141,302 |
1 | 42,143,832 | 42,144,027 |
CDS
Exon number | Type | Start | Stop |
---|---|---|---|
5 | CDS | 42,114,273 | 42,114,470 |
4 | CDS | 42,114,780 | 42,114,906 |
3 | CDS | 42,117,515 | 42,117,624 |
2 | CDS | 42,141,169 | 42,141,302 |
1 | CDS | 42,143,832 | 42,143,955 |
Other genome
Genome | Chromosome | Start | End | Links |
---|---|---|---|---|
hg38 | chr17 | 44,036,143 | 44,066,659 | Link |
CDS sequence
ATGGCGGCTCCTCCGGGCGAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAGGGCGAGGTGGTAGCCTTTGACTACCAATCCAAAATGCTGGCTTTAAAATGTCCCTCTTCCAGTGGAAAGCCCAACCATGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAGCTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGTGCTGGTGTCTCTCTAGAGGGCCAGCAGCTCTTCCAGACCATTCACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCAAAATAAGACAGAGTCTCGCTCTGTCGCCCACGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTACAGGCGTATGCCACCACACCCGGCTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTGA
Amino sequence
MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIRQSLALSPTLECSGAISAHCNLRLPGSSDSPASASRVPGTTGVCHHTRLEMGFHHVGQAGLELLT*