ENST00000614239.1 LHX1

Information
Transcript ID
ENST00000614239.1
Genome
hg19
Position
chr17:35,294,772-35,301,912
Strand
+
CDS length
1,221
Amino acid length
407
Gene symbol
LHX1
Gene type
protein-coding
Gene description
LIM homeobox 1
Gene Entrez Gene ID
3975
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 35,294,772 35,295,664
2 35,297,587 35,297,813
3 35,297,907 35,298,184
4 35,299,497 35,299,662
5 35,300,049 35,301,231
6 35,301,233 35,301,912
CDS
Exon number Type Start Stop
1 CDS 35,295,495 35,295,664
2 CDS 35,297,587 35,297,813
3 CDS 35,297,907 35,298,184
4 CDS 35,299,497 35,299,662
5 CDS 35,300,049 35,300,428
Other genome
Genome Chromosome Start End Links
hg38 chr17 36,937,475 36,944,612 Link
CDS sequence
ATGGTTCACTGTGCCGGCTGCAAAAGGCCCATCCTGGACCGCTTTCTCTTGAACGTGCTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCAGGGAAGGCAAACTCTACTGCAAGAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCCTAGCGACCTGGTGCGGAGAGCGCGGAGCAAAGTGTTTCACCTGAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCACTGGCGAGGAACTCTACATCATCGACGAGAATAAGTTCGTCTGCAAAGAGGATTACCTAAGTAACAGCAGTGTTGCCAAAGAGAACAGCCTTCACTCGGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGATTCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAACGTGTCGGACAAGGAAGCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAAGCGGCGGGGACCGCGCACCACCATCAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTCGCTGCTACACCCAAGCCCACCCGCCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATTCAGGTCTGGTTCCAGAACCGGCGCTCCAAGGAGCGGAGGATGAAGCAGCTGAGCGCCCTGGGCGCCCGGCGCCACGCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCGCTGGTGGACCGCCTGGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGGCCCGGGGGCAACTACGACTTCTTCCCGCAAGGCCCCCCGTCCTCGCAGGCCCAGACACCAGTGGACCTACCCTTCGTGCCGTCATCTGGGCCGTCCGGGACGCCCCTGGGTGGCCTGGAGCACCCGCTGCCGGGCCACCACCCGTCGAGCGAGGCGCAGCGGTTTACCGACATCCTGGCGCACCCACCCGGGGACTCGCCCAGCCCCGAGCCCAGCCTGCCCGGGCCTCTGCACTCCATGTCGGCCGAGGTCTTCGGACCCAGCCCGCCCTTCTCGTCGCTGTCGGTCAACGGTGGGGCGAGCTACGGAAACCACCTGTCCCACCCCCCCGAAATGAACGAGGCGGCCGTGTGGTAG
Amino sequence
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW*