ENST00000300146.10 PATL1

Information
Transcript ID
ENST00000300146.10
Genome
hg38
Position
chr11:59,636,716-59,669,037
Strand
-
CDS length
2,313
Amino acid length
771
Gene symbol
PATL1
Gene type
protein-coding
Gene description
PAT1 homolog 1, processing body mRNA decay factor
Gene Entrez Gene ID
219988
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
19 59,636,716 59,638,411
18 59,639,048 59,639,197
17 59,639,292 59,639,383
16 59,642,880 59,643,035
15 59,647,754 59,647,913
14 59,649,462 59,649,610
13 59,650,754 59,650,813
12 59,651,544 59,651,641
11 59,652,464 59,652,587
10 59,652,838 59,653,018
9 59,653,983 59,654,072
8 59,655,523 59,655,740
7 59,655,956 59,656,045
6 59,656,499 59,656,600
5 59,657,530 59,657,724
4 59,658,866 59,658,946
3 59,659,252 59,659,469
2 59,666,853 59,666,964
1 59,668,881 59,669,037
CDS
Exon number Type Start Stop
19 CDS 59,638,390 59,638,411
18 CDS 59,639,048 59,639,197
17 CDS 59,639,292 59,639,383
16 CDS 59,642,880 59,643,035
15 CDS 59,647,754 59,647,913
14 CDS 59,649,462 59,649,610
13 CDS 59,650,754 59,650,813
12 CDS 59,651,544 59,651,641
11 CDS 59,652,464 59,652,587
10 CDS 59,652,838 59,653,018
9 CDS 59,653,983 59,654,072
8 CDS 59,655,523 59,655,740
7 CDS 59,655,956 59,656,045
6 CDS 59,656,499 59,656,600
5 CDS 59,657,530 59,657,724
4 CDS 59,658,866 59,658,946
3 CDS 59,659,252 59,659,469
2 CDS 59,666,853 59,666,964
1 CDS 59,668,881 59,668,895
Other genome
Genome Chromosome Start End Links
hg19 chr11 59,404,189 59,436,510 Link
CDS sequence
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTGGATGAAGATGAAGATGCATTTCAGGGACTGGGAGAAGAAGATGAAGAGATTGATCAATTCAATGATGATACATTTGGGTCAGGTGCAGTTGATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAATTGGAAGAAAAGCTACCAGTGGCAGTTAATGAACAAACAGGCAATGGAGAGAGAGATGAAATGGACTTGTTGGGTGACCATGAGGAGAATCTGGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAACTAGAAGATCCAGCTATTATGAGGGCAGTGCAGACCAGGCCAGTTTTACAACCCCAACCAGGAAGTCTGAATTCCAGTATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGAGGACCACTGCTTGCTCAGGAAATGCCTACAGTGTCTGTATTAGAATATGCTTTGCCTCAGAGGCCCCCCCAGGGTCCAGAAGATGATCGGGACCTTTCTGAACGAGCATTACCAAGGCGGTCAACTTCACCTATCATTGGCAGTCCTCCTGTTAGAGCTGTCCCCATAGGCACCCCACCTAAACAGATGGCTGTACCCAGCTTCACCCAACAGATTCTGTGTCCGAAGCCTGTCCATGTTCGGCCCCCAATGCCACCTCGTTATCCTGCTCCCTATGGTGAGAGGATGTCTCCAAACCAGCTCTGCAGTGTCCCGAACTCTTCCCTCCTGGGTCACCCTTTTCCTCCTAGTGTTCCTCCTGTTCTCAGCCCCCTCCAGAGAGCACAGCTTCTTGGAGGAGCACAGCTACAGCCTGGACGGATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGATTTGTTGGTAGTCCACTTGCTGCCATGAATCCCAAGTTGCTACAAGGGCGAGTTGGGCAGATGCTTCCCCCAGCACCAGGCTTCCGTGCCTTCTTTAGTGCTCCACCCTCCGCTACACCACCTCCACAGCAGCACCCTCCTGGCCCAGGACCCCACCTGCAAAACCTAAGATCTCAGGCCCCAATGTTTAGACCGGACACAACTCACCTCCATCCACAGCACCGTCGACTCTTGCATCAGAGACAGCAACAGAATAGAAGTCAGCATCGGAATCTCAATGGTGCGGGAGATAGAGGAAGTCACCGGAGCAGTCATCAAGATCATCTCCGAAAGGATCCATATGCCAATCTCATGTTGCAGCGGGAAAAGGATTGGGTCTCTAAAATCCAGATGATGCAACTGCAAAGCACTGATCCCTACCTGGATGATTTTTATTACCAGAATTACTTTGAAAAACTGGAGAAACTGTCAGCTGCTGAAGAAATACAAGGTGATGGCCCTAAGAAGGAGCGCACCAAGCTTATCACCCCTCAGGTGGCCAAACTGGAGCACGCCTATAAGCCAGTGCAATTTGAGGGCTCTTTGGGAAAGCTTACCGTTTCTAGTGTGAATAATCCCCGAAAAATGATTGATGCTGTTGTGACATCTCGGAGTGAGGATGATGAGACAAAAGAAAAACAAGTTCGAGACAAGAGGAGAAAAACCCTTGTTATAATTGAGAAAACCTACAGCTTACTCCTTGATGTGGAGGACTATGAAAGACGTTATCTCCTAAGTCTGGAAGAAGAGCGACCTGCCCTAATGGATGACAGAAAGCACAAAATTTGTAGCATGTATGACAACTTAAGGGGGAAATTGCCTGGACAAGAGAGGCCTAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGTATTCTTCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGACAACAGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCACAAGATGAGGTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTTCTCTATCATCTTCCATCAGTGAGTATCACCAGCCTTTTGCGACAGCTAATGAACCTACCTCAAAGTGCAGCTACACCAGCACTCTCCAATCCTCACCTCACTGCTGTGCTCCAGAACAAGTTTGGCCTGTCACTGCTCCTCATCCTCCTGAGCCGTGGTGAAGACCTACAGAGTTCAGACCCTGCTACAGAATCAACACAAAATAATCAGTGGACGGAGGTGATGTTCATGGCAACACGAGAACTTCTGCGGATTCCCCAAGCAGCCCTGGCCAAGCCAATCTCTATACCTACAAACCTAGTGTCCCTCTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAGACAAAACTGCAGCTAGTTCAGGGGATACGATAA
Amino sequence
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR*