ENST00000300146.10 PATL1

Information
Transcript ID
ENST00000300146.10
Genome
hg19
Position
chr11:59,404,189-59,436,510
Strand
-
CDS length
2,313
Amino acid length
771
Gene symbol
PATL1
Gene type
protein-coding
Gene description
PAT1 homolog 1, processing body mRNA decay factor
Gene Entrez Gene ID
219988
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
19 59,404,189 59,405,884
18 59,406,521 59,406,670
17 59,406,765 59,406,856
16 59,410,353 59,410,508
15 59,415,227 59,415,386
14 59,416,935 59,417,083
13 59,418,227 59,418,286
12 59,419,017 59,419,114
11 59,419,937 59,420,060
10 59,420,311 59,420,491
9 59,421,456 59,421,545
8 59,422,996 59,423,213
7 59,423,429 59,423,518
6 59,423,972 59,424,073
5 59,425,003 59,425,197
4 59,426,339 59,426,419
3 59,426,725 59,426,942
2 59,434,326 59,434,437
1 59,436,354 59,436,510
CDS
Exon number Type Start Stop
19 CDS 59,405,863 59,405,884
18 CDS 59,406,521 59,406,670
17 CDS 59,406,765 59,406,856
16 CDS 59,410,353 59,410,508
15 CDS 59,415,227 59,415,386
14 CDS 59,416,935 59,417,083
13 CDS 59,418,227 59,418,286
12 CDS 59,419,017 59,419,114
11 CDS 59,419,937 59,420,060
10 CDS 59,420,311 59,420,491
9 CDS 59,421,456 59,421,545
8 CDS 59,422,996 59,423,213
7 CDS 59,423,429 59,423,518
6 CDS 59,423,972 59,424,073
5 CDS 59,425,003 59,425,197
4 CDS 59,426,339 59,426,419
3 CDS 59,426,725 59,426,942
2 CDS 59,434,326 59,434,437
1 CDS 59,436,354 59,436,368
Other genome
Genome Chromosome Start End Links
hg38 chr11 59,636,716 59,669,037 Link
CDS sequence
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTGGATGAAGATGAAGATGCATTTCAGGGACTGGGAGAAGAAGATGAAGAGATTGATCAATTCAATGATGATACATTTGGGTCAGGTGCAGTTGATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAATTGGAAGAAAAGCTACCAGTGGCAGTTAATGAACAAACAGGCAATGGAGAGAGAGATGAAATGGACTTGTTGGGTGACCATGAGGAGAATCTGGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAACTAGAAGATCCAGCTATTATGAGGGCAGTGCAGACCAGGCCAGTTTTACAACCCCAACCAGGAAGTCTGAATTCCAGTATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGAGGACCACTGCTTGCTCAGGAAATGCCTACAGTGTCTGTATTAGAATATGCTTTGCCTCAGAGGCCCCCCCAGGGTCCAGAAGATGATCGGGACCTTTCTGAACGAGCATTACCAAGGCGGTCAACTTCACCTATCATTGGCAGTCCTCCTGTTAGAGCTGTCCCCATAGGCACCCCACCTAAACAGATGGCTGTACCCAGCTTCACCCAACAGATTCTGTGTCCGAAGCCTGTCCATGTTCGGCCCCCAATGCCACCTCGTTATCCTGCTCCCTATGGTGAGAGGATGTCTCCAAACCAGCTCTGCAGTGTCCCGAACTCTTCCCTCCTGGGTCACCCTTTTCCTCCTAGTGTTCCTCCTGTTCTCAGCCCCCTCCAGAGAGCACAGCTTCTTGGAGGAGCACAGCTACAGCCTGGACGGATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGATTTGTTGGTAGTCCACTTGCTGCCATGAATCCCAAGTTGCTACAAGGGCGAGTTGGGCAGATGCTTCCCCCAGCACCAGGCTTCCGTGCCTTCTTTAGTGCTCCACCCTCCGCTACACCACCTCCACAGCAGCACCCTCCTGGCCCAGGACCCCACCTGCAAAACCTAAGATCTCAGGCCCCAATGTTTAGACCGGACACAACTCACCTCCATCCACAGCACCGTCGACTCTTGCATCAGAGACAGCAACAGAATAGAAGTCAGCATCGGAATCTCAATGGTGCGGGAGATAGAGGAAGTCACCGGAGCAGTCATCAAGATCATCTCCGAAAGGATCCATATGCCAATCTCATGTTGCAGCGGGAAAAGGATTGGGTCTCTAAAATCCAGATGATGCAACTGCAAAGCACTGATCCCTACCTGGATGATTTTTATTACCAGAATTACTTTGAAAAACTGGAGAAACTGTCAGCTGCTGAAGAAATACAAGGTGATGGCCCTAAGAAGGAGCGCACCAAGCTTATCACCCCTCAGGTGGCCAAACTGGAGCACGCCTATAAGCCAGTGCAATTTGAGGGCTCTTTGGGAAAGCTTACCGTTTCTAGTGTGAATAATCCCCGAAAAATGATTGATGCTGTTGTGACATCTCGGAGTGAGGATGATGAGACAAAAGAAAAACAAGTTCGAGACAAGAGGAGAAAAACCCTTGTTATAATTGAGAAAACCTACAGCTTACTCCTTGATGTGGAGGACTATGAAAGACGTTATCTCCTAAGTCTGGAAGAAGAGCGACCTGCCCTAATGGATGACAGAAAGCACAAAATTTGTAGCATGTATGACAACTTAAGGGGGAAATTGCCTGGACAAGAGAGGCCTAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGTATTCTTCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGACAACAGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCACAAGATGAGGTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTTCTCTATCATCTTCCATCAGTGAGTATCACCAGCCTTTTGCGACAGCTAATGAACCTACCTCAAAGTGCAGCTACACCAGCACTCTCCAATCCTCACCTCACTGCTGTGCTCCAGAACAAGTTTGGCCTGTCACTGCTCCTCATCCTCCTGAGCCGTGGTGAAGACCTACAGAGTTCAGACCCTGCTACAGAATCAACACAAAATAATCAGTGGACGGAGGTGATGTTCATGGCAACACGAGAACTTCTGCGGATTCCCCAAGCAGCCCTGGCCAAGCCAATCTCTATACCTACAAACCTAGTGTCCCTCTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAGACAAAACTGCAGCTAGTTCAGGGGATACGATAA
Amino sequence
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR*