ENST00000535041.5 LRTM2
Information
- Transcript ID
- ENST00000535041.5
- Genome
- hg19
- Position
- chr12:1,929,797-1,945,565
- Strand
- +
- CDS length
- 1,113
- Amino acid length
- 371
- Gene symbol
- LRTM2
- Gene type
- protein-coding
- Gene description
- leucine rich repeats and transmembrane domains 2
- Gene Entrez Gene ID
- 654429
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 1,929,797 | 1,929,980 |
| 2 | 1,936,573 | 1,936,760 |
| 3 | 1,937,242 | 1,937,381 |
| 4 | 1,940,101 | 1,940,691 |
| 5 | 1,943,433 | 1,945,565 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 3 | CDS | 1,937,315 | 1,937,381 |
| 4 | CDS | 1,940,101 | 1,940,691 |
| 5 | CDS | 1,943,433 | 1,943,887 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr12 | 1,820,631 | 1,836,399 | Link |
CDS sequence
ATGCTGGCGCCGGGCAGCAGCCCTGGGCAGAGGGGCAGGCTCGCCCTGCAGTGGAGGCAAGTCTCCTGGATCACCTGCTGGATCGCCCTGTATGCTGTGGAGGCCCTCCCCACCTGCCCTTTCTCCTGCAAGTGTGACAGCCGCAGCCTGGAGGTGGACTGCAGTGGCCTTGGCCTCACCACGGTGCCCCCAGACGTGCCCGCAGCCACCCGAACCCTCTTGCTCTTGAACAATAAGCTGAGTGCCCTGCCAAGCTGGGCTTTCGCCAACCTCTCCAGCCTGCAGCGGTTGGACCTGTCCAACAACTTCCTGGACCGGCTGCCCCGCTCCATTTTCGGGGACCTGACGAATCTGACTGAGCTTCAGCTGCGCAATAACAGCATCAGGACCCTGGACAGGGACCTGCTGCGGCACTCGCCGCTGCTCCGCCACCTGGACCTGTCCATCAACGGCCTGGCCCAGTTGCCCCCTGGTCTTTTCGACGGGCTCCTGGCTCTGCGCTCCCTCTCGCTTCGCTCCAACCGTCTGCAGAATCTGGACCGGCTGACATTTGAACCCCTAGCAAACCTGCAGCTGCTGCAGGTCGGGGATAACCCCTGGGAGTGTGACTGTAACCTGCGTGAGTTCAAACACTGGATGGAGTGGTTCTCCTACCGAGGGGGACGCTTGGACCAGCTTGCCTGCACCCTGCCCAAGGAGCTGAGGGGGAAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTACTGCTCCCAGCTGGAGGACGAGAATAGCTCAGCTGGGCTGGATATTCCTGGGCCACCCTGCACCAAGGCCAGTCCAGAGCCTGCTAAGCCCAAGCCCGGGGCTGAGCCGGAGCCGGAGCCCAGCACAGCCTGCCCACAGAAGCAGAGGCACCGGCCGGCGAGCGTGAGGCGAGCCATGGGCACGGTGATCATTGCAGGGGTCGTGTGCGGCGTCGTCTGCATCATGATGGTGGTGGCCGCTGCCTATGGCTGCATCTACGCCTCCCTCATGGCCAAGTACCACCGGGAGCTCAAAAAGCGCCAGCCCCTGATGGGGGACCCCGAGGGCGAGCACGAGGACCAGAAGCAGATCTCTTCTGTGGCCTGA
Amino sequence
MLAPGSSPGQRGRLALQWRQVSWITCWIALYAVEALPTCPFSCKCDSRSLEVDCSGLGLTTVPPDVPAATRTLLLLNNKLSALPSWAFANLSSLQRLDLSNNFLDRLPRSIFGDLTNLTELQLRNNSIRTLDRDLLRHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQNLDRLTFEPLANLQLLQVGDNPWECDCNLREFKHWMEWFSYRGGRLDQLACTLPKELRGKDMRMVPMEMFNYCSQLEDENSSAGLDIPGPPCTKASPEPAKPKPGAEPEPEPSTACPQKQRHRPASVRRAMGTVIIAGVVCGVVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA*