ENST00000398153.7 HDDC2
Information
- Transcript ID
- ENST00000398153.7
- Genome
- hg19
- Position
- chr6:125,596,496-125,623,113
- Strand
- -
- CDS length
- 615
- Amino acid length
- 205
- Gene symbol
- HDDC2
- Gene type
- protein-coding
- Gene description
- HD domain containing 2
- Gene Entrez Gene ID
- 51020
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 6 | 125,596,496 | 125,597,389 |
| 5 | 125,598,248 | 125,598,386 |
| 4 | 125,613,987 | 125,614,055 |
| 3 | 125,619,860 | 125,619,962 |
| 2 | 125,621,684 | 125,621,805 |
| 1 | 125,622,995 | 125,623,113 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 6 | CDS | 125,597,292 | 125,597,389 |
| 5 | CDS | 125,598,248 | 125,598,386 |
| 4 | CDS | 125,613,987 | 125,614,055 |
| 3 | CDS | 125,619,860 | 125,619,962 |
| 2 | CDS | 125,621,684 | 125,621,805 |
| 1 | CDS | 125,622,995 | 125,623,078 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr6 | 125,275,350 | 125,301,967 | Link |
CDS sequence
ATGGCTTCGGTCTCCTCTGCGACCTTCTCGGGCCACGGGGCTCGGTCCCTACTGCAGTTCCTGCGGCTGGTAGGGCAGCTCAAGAGAGTCCCACGAACTGGCTGGGTATACAGAAATGTCCAGAGGCCGGAGAGCGTTTCAGATCACATGTACCGGATGGCAGTTATGGCTATGGTGATCAAAGATGACCGTCTTAACAAAGACCGATGTGTACGCCTAGCCCTGGTTCATGATATGGCAGAATGCATCGTTGGGGACATAGCACCAGCAGATAACATCCCCAAAGAAGAAAAACATAGGCGAGAAGAGGAAGCTATGAAGCAGATAACCCAGCTCCTACCAGAGGACCTCAGAAAGGAGCTCTATGAACTTTGGGAAGAGTACGAGACCCAATCTAGTGCAGAAGCCAAATTTGTGAAGCAGCTAGACCAATGTGAAATGATTCTTCAAGCATCTGAATATGAAGACCTTGAACACAAACCTGGGAGACTGCAAGACTTCTATGATTCCACAGCAGGAAAATTCAATCACCCTGAGATAGTCCAGCTTGTTTCTGAACTTGAGGCAGAAAGAAGCACTAACATAGCTGCAGCTGCCAGTGAGCCACACTCCTGA
Amino sequence
MASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASEPHS*