ENST00000482399.5 VPS52

Information
Transcript ID
ENST00000482399.5
Genome
hg19
Position
chr6:33,218,049-33,239,653
Strand
-
CDS length
267
Amino acid length
89
Gene symbol
VPS52
Gene type
protein-coding
Gene description
VPS52 subunit of GARP complex
Gene Entrez Gene ID
6293
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
19 33,218,049 33,218,764
18 33,219,295 33,219,413
17 33,219,637 33,219,748
16 33,231,261 33,231,326
15 33,231,549 33,231,656
14 33,231,785 33,231,880
13 33,232,151 33,232,274
12 33,232,559 33,232,677
11 33,234,334 33,234,489
10 33,234,965 33,235,098
9 33,235,459 33,235,516
8 33,235,642 33,235,774
7 33,235,885 33,235,985
6 33,236,276 33,236,426
5 33,236,791 33,236,966
4 33,237,267 33,237,334
3 33,237,521 33,237,596
2 33,237,976 33,238,060
1 33,238,914 33,239,653
CDS
Exon number Type Start Stop
1 CDS 33,239,186 33,239,452
Other genome
Genome Chromosome Start End Links
hg38 chr6 33,250,272 33,271,876 Link
CDS sequence
ATGGCCGCCGCTGCGACCATGGCGGCTGCGGCCCGGGAACTGGTGTTGCGGGCTGGGACCTCAGATATGGAGGAGGAAGAGGGCCCGCTGGTGAGAGCGCGGAGCTGTTTCTCCTCCGTAGTTCCGGTGCTCCTAGCTTCAGAAAGACCTGAGCTGGGTTTAGGCACAAGGGTGGGAACTTGGCTGCTACCCGTGATATTACCTGTTTGGCTCCCCGTACCCTTCCCTGTGATCAGACCCGACCCTGAGCGGGACCCTAGTGGCTGA
Amino sequence
MAAAATMAAAARELVLRAGTSDMEEEEGPLVRARSCFSSVVPVLLASERPELGLGTRVGTWLLPVILPVWLPVPFPVIRPDPERDPSG*