ENST00000641458.2 RGPD1

Information
Transcript ID
ENST00000641458.2
Genome
hg19
Position
chr2:87,169,241-87,241,099
Strand
+
CDS length
5,271
Amino acid length
1,757
Gene symbol
RGPD1
Gene type
protein-coding
Gene description
RANBP2 like and GRIP domain containing 1
Gene Entrez Gene ID
400966
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 87,169,241 87,169,431
2 87,178,419 87,178,483
3 87,180,065 87,180,176
4 87,180,621 87,180,773
5 87,184,829 87,185,059
6 87,185,405 87,185,550
7 87,190,152 87,190,347
8 87,196,351 87,196,438
9 87,198,870 87,199,079
10 87,201,196 87,201,377
11 87,201,461 87,201,636
12 87,201,804 87,201,927
13 87,202,851 87,203,009
14 87,203,276 87,203,413
15 87,203,676 87,203,822
16 87,204,703 87,204,882
17 87,204,971 87,205,054
18 87,208,206 87,208,323
19 87,211,877 87,211,971
20 87,212,699 87,214,922
21 87,221,964 87,222,103
22 87,224,686 87,224,881
23 87,239,636 87,241,099
CDS
Exon number Type Start Stop
1 CDS 87,169,360 87,169,431
2 CDS 87,178,419 87,178,483
3 CDS 87,180,065 87,180,176
4 CDS 87,180,621 87,180,773
5 CDS 87,184,829 87,185,059
6 CDS 87,185,405 87,185,550
7 CDS 87,190,152 87,190,347
8 CDS 87,196,351 87,196,438
9 CDS 87,198,870 87,199,079
10 CDS 87,201,196 87,201,377
11 CDS 87,201,461 87,201,636
12 CDS 87,201,804 87,201,927
13 CDS 87,202,851 87,203,009
14 CDS 87,203,276 87,203,413
15 CDS 87,203,676 87,203,822
16 CDS 87,204,703 87,204,882
17 CDS 87,204,971 87,205,054
18 CDS 87,208,206 87,208,323
19 CDS 87,211,877 87,211,971
20 CDS 87,212,699 87,214,922
21 CDS 87,221,964 87,222,103
22 CDS 87,224,686 87,224,881
23 CDS 87,239,636 87,239,670
Other genome
Genome Chromosome Start End Links
hg38 chr2 86,942,118 87,013,976 Link
CDS sequence
ATGAGGCGCAGCAAGGCCTACGGGGAGCGGTACGTCGCCTCGGTGCAGGGCTCCGCCCCGTCGCCTGGAAAGAAGTTGAGAGGATTCTATTTTGCAAAGCTGTATTATGAAGCTAAAGAATATGATCTTGCTAAAAAATACGTATGTACTTACCTTAGTGTGCAAGAGAGGGATCCCAGAGCTCACAGATTTCTGGGTCTTCTTTATGAATTGGAAGAAAACACAGAGAAAGCCGTTGAATGTTACAGGCGTTCACTGGAATTAAACCCACCACAAAAAGATCTTGTGTTGAAGATTGCAGAATTGCTTTGTAAAAATGATGTTACTGATGGAAGAGCAAAATACTGGGTTGAAAGGGCAGCGAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGGAACATCTTCTAGATTGTGAAGGTGAAGATGGATGGAATAAACTTTTTGACTGGATTCAGTCAGAACTTTATGTAAGACCTGATGACGTCCATATGAACATCCGGCTAGTGGAGTTGTATCGCTCAAATAAAAGATTGAAGGATGCTGTGGCCCGCTGCCATGAGGCAGAGAGGAACATAGCTTTGCGTTCAAGTTTAGAGTGGAATTCGTGTGTTGTACAGACCCTTAAGGAATATCTGGAGTCTTTACAGTGTTTGGAGTCTGATAAAAGTGACTGGCGAGCAACCAATACAGACTTACTGCTGGCCTATGCTAATCTTATGCTTCTTACGCTTTCCACTAGAGATGTGCAGGAAAGTAGAGAATTACTGGAAAGTTTTGATAGTGCTCTTCAGTCTGCAAAATCTTCTTTGGGTGGAAATGATGAACTGTCAGCTACTTTCTTAGAAATGAAAGGACATTTCTACATGCATGCTGGTTCTCTGCTCTTGAAGATGGGTCAGCATGGTAATAATGTTCAATGGCAAGCTCTTTCTGAGCTGGCTGCATTGTGCTATGTCATAGCATTTCAGGTTCCAAGACCAAAGATTAAATTAATAAAAGGTGAAGCTGGACAAAATCTGCTGGAAATGATGGCCTGTGACCGACTGAGCCAATCAGGGCATATGTTGCTAAACTTAAGTCGTGGCAAGCAAGATTTTTTAAAAGAGGTTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGTGTTATATAATGCTCTGTTTTCTAGTCAGTCATCTAAGGATACATCTTTTCTTGGTAGCGATGATATTGGAAACATTGATGTACAAGAACCAGAGCTTGAAGATTTGGCTAGATACGATGTTGGTGCTATTCAAGCACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTACAGTGGAATTCATTGCCTGCTTTACCTGGAATCCGAAAATGGCTAAAACAGCTTTTCCATCATTTGCCCCAGGAAACCTCAAGGCTTGAAACAAATGCACCTGAATCAATATGTATTTTAGATCTTGAAGTATTTCTCCTTGGAGTAGTATATACCAGCCACTTACAATTAAAGGAGAAATGTAATTCTCACCACAGCTCCTATCAGCCGTTATGCCTGCCCCTTCCTGTGTGTAAACGGCTTTGTACAGAGAGACAAAAATCTTGGTGGGATGCGGTTTGTACTCTGATTCACAGAAAAGCAGTACCTGGAAACTCAGCAGAATTGAGACTTGTAGTTCAGCATGAAATAAACACTCTAAGAGCCCAGGAAAAACATGGCCTTCAACCTGCTCTGCTTGTACATTGGGCAAAATGCCTTCAGAAAATGGGCAGGGGTCTTAATTCTTCTTATGATCAACAAGAATACATAGGGAGAAGTGTTCATTATTGGAAGAAAGTTTTGCCATTGTTGAAGATAATAAAGAAGAACAGTATTCCTGAACCTATTGATCCTCTGTTTAAACATTTTCATAGTGTAGACATTCAGGCATCAGAAATTGTTGAGTATGAAGAAGATGCACACATAACTTTTGCTATATTGGATGCAGTACATGGAAATATAGAAGATGCTGTGACTGCTTTTGAATCTATAAAAAGTGTTGTTTCTTATTGGAATCTTGCACTGATTTTTCACAGGAAAGCAGAAGACATTGAAAATGATGCCGTTTTTCCTGAAGAACAAGAAGAATGCAAAAATTATCTGAGAAAGACCAGGGACTACCTAATAAAGATTATAGATGACAGTGATTCAAATCTTTCAGTGGTCAAGAAATTGCCTGTGCCCCTGGAGTCTGTAAAAGAGATGCTTAAGTCAGTCATGCAGGAACTCGAAGACTATAGTGAAGGAGGTCCTCTCTATAAAAATGGTTCTTTGCGAAATGCAGATTCAGAAATAAAACATTCTACACCATCTCCTACCAAATATTCACTATCACCAAGTAAAAGTTACAAGTATTCTCCCAAAACACCACCTCGATGGGCAGAAGATCAGAATTCTTTACGGAAAATGATTTGCCAAGAAGTAAAGGCCATTACGAAACTAAATAGCAGTAAGTCAGCATCCCGTCATCGTTGGCCCACAGAGAATTATGGACCAGACTCGGTGCCTGATGGATATCAGGGGTCACAGACATTTCATGGGGCTCCACTAACAGTTGCAACTACTGGCCCTTCAGTATATTATAGTCAGTCACCAGCATATAATTCCCAGTATCTTCTCAGACCAGCAGCTAATGTTACTCCCACAAAGGGTTCTTCTAATACAGAATTTAAGTCAACCAAAGAAGGATTTTCCATCGCTGTGTCTGCTGATGGATTTAAATTTGGCATTTCGGAACCAGGAAATCAAGAAAAGAAAAGTGAAAAGCCTCTTGAAAATGATACTGGCTTCCAGGCTCAGGATATTAGTGGCCAGAAGAATGGCCGTGGTGTGATTTTTGGCCAAACAAGTAGCACTTTTACATTTGCAGATGTTGCAAAATCAACTTCAGGAGAAGGATTTCAGTTTGGCAAAAAAGACCCCAATTTCAAGGGATTTTCAGGTGCTGGAGAAAAATTATTCTCATCACAATGCGGTAAAATGGCCAATAAAGCAAACACTTCCGGTGACTTTGAGAAAGATGATGATGCCTGTAAGACTGAGGACAGCGATGACATCCATTTTGAACCAGTAGTTCAAATGCCTGAAAAAGTAGAACTTGTAACAGGAGAAGAAGGTGAAAAAGTTCTGTATTCACAGGGGGTAAAACTATTTAGATTTGATGCTGAGATAAGTCAGTGGAAAGAAAGGGGCTTGGGGAACTTAAAAATTCTCAAAAATGAGGTCAATGGCAAACCAAGAATGCTGATGCGAAGAGACCAAGTACTAAAAGTGTGTGCTAATCATTGGATAACAACTACAATGAACCTGAAGCCCCTCTCTGGATCAGATAGAGCATGGATGTGGTTAGCCAGTGATTTCTCTGATGGTGATGCCAAACTAGAGCGGTTGGCAGCACAATTTAAAACACCAGAGCTGGCTGAAGAATTCAAGCAGAAATTTGAGGAATGCCAGCGGCTTCTGTTAGACATACCACTTCAAACTCCCCATAAACTTGTAGATACTGGCAGAGCTGCCAAGCTAATACAGAGAGCTGAAGAAATGAAGAGTGGACTGAAAGATTTCAAAACGTTTTTGACAAATGATCAAACAAAAGTCACTGAGGAAGAAAATAAGGGTTCAGGTACAGGTGCAGCCGGTGCCTCAGACACAACAATAAAACCCAATCCTGAAAACACTGGGCCCACATTAGAATGGGATAACTATGATTTAAGGGAAGATGCTTTGGATGATAATGTTAGTAGTAGCTCAGTACATGATTCTCCGTTGGCAAGTAGCCCTGTGAGAAAAAATATTTTCCGCTTTGATGAGTCAACAACAGGATTTAACTTCAGTTTTAAATCTGCTTTGAGTCTATCTAAGTCTCCTGCCAAGTTGAATCAGAGTGGGACTTCAGTTGGCACTGATGAAGAATCTGATGTTACTCAAGAAGAAGAGAGAGATGGACAGTACTTTGAACCTGTTGTTCCTTTACCTGATCTAGTTGAAGTATCCAGTGGTGAGGAAAATGAACAAGTTGTTTTTAGTCACAGGGCAGAACTCTACAGATATGATAAAGATGTTGGTCAATGGAAAGAAAGGGGCATTGGTGATATAAAGATTTTACAGAATTATGATAATAAGCAAGTTCGTATAGTGATGAGAAGGGACCAAGTATTAAAACTTTGTGCCAATCACAGAATAACTCCAGACATGAGTTTGCAAAATATGAAAGGGACAGAAAGAGTATGGGTGTGGACTGCATGTGATTTTGCAGATGGAGAAAGAAAAGTAGAGCATTTAGCTGTTCGTTTTAAACTACAGGATGTTGCAGACTCATTTAAGAAAATTTTTGATGAAGCAAAAACAGCCCAGGAAAAAGATTCTTTGATAACACCTCATGTTTCTCGGTCAAGCACTCCCAGAGAGTCACCATGTGGCAAAATTGCTGTAGCTGTATTAGAAGAAACCACAAGAGAGAGGACAGATGTTATTCAGGGTGATGATGTAGCAGATGCAGCTTCAGAAGTTGAAGTGTCTAGCACATCTGAAACAACAACAAAAGCAGTGGTTTCTCCTCCAAAGTTTGTATTTGGTTCAGAGTCTGTTAAAAGAATTTTTAGTAGTGAAAAATCAAACCCATTTGCATTTGGCAACAGTTCTGCCACTGGGTCTTTGTTTGGATTTAGTTTTAATGCACCTTTGAAAAGTAACGATAGTGAAACTAGTTCAGTAGCCCAGAGTGGATCTGAAAGCAAAGTGGAACCTAAAAAATGTGAACTGTCAAAGAACTCTGATATCGAACAGTCTTCAGATAGCAAAGTCAAAAATCTCTCTGCTTCCTTTCCAATGGAAGAATCTTCAATCAACTACACATTTAAAACACCAGAAAAGGAGCCTCCATTATGGCATGCTGAATTTACCAAAGAAGAATTGGTTCAGAAGCTCAGTTCCACCACAAAAAGTGCAGATCAGTTAAACGGCCTGCTTCGGGAAACAGAGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAGCTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAGGTCTTCAAGAAACCTCCATACCCAAGAAAAAATAG
Amino sequence
MRRSKAYGERYVASVQGSAPSPGKKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCHEAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDELSATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLKQLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNSAELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDAVFPEEQEECKNYLRKTRDYLIKIIDDSDSNLSVVKKLPVPLESVKEMLKSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTKYSLSPSKSYKYSPKTPPRWAEDQNSLRKMICQEVKAITKLNSSKSASRHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTKEGFSIAVSADGFKFGISEPGNQEKKSEKPLENDTGFQAQDISGQKNGRGVIFGQTSSTFTFADVAKSTSGEGFQFGKKDPNFKGFSGAGEKLFSSQCGKMANKANTSGDFEKDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLERLAAQFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDNVSSSSVHDSPLASSPVRKNIFRFDESTTGFNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSSTSETTTKAVVSPPKFVFGSESVKRIFSSEKSNPFAFGNSSATGSLFGFSFNAPLKSNDSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLSASFPMEESSINYTFKTPEKEPPLWHAEFTKEELVQKLSSTTKSADQLNGLLRETEATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQGLQETSIPKKK*