ENST00000641458.2 RGPD1

Information
Transcript ID
ENST00000641458.2
Genome
hg38
Position
chr2:86,942,118-87,013,976
Strand
+
CDS length
5,271
Amino acid length
1,757
Gene symbol
RGPD1
Gene type
protein-coding
Gene description
RANBP2 like and GRIP domain containing 1
Gene Entrez Gene ID
400966
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 86,942,118 86,942,308
2 86,951,296 86,951,360
3 86,952,942 86,953,053
4 86,953,498 86,953,650
5 86,957,706 86,957,936
6 86,958,282 86,958,427
7 86,963,029 86,963,224
8 86,969,228 86,969,315
9 86,971,747 86,971,956
10 86,974,073 86,974,254
11 86,974,338 86,974,513
12 86,974,681 86,974,804
13 86,975,728 86,975,886
14 86,976,153 86,976,290
15 86,976,553 86,976,699
16 86,977,580 86,977,759
17 86,977,848 86,977,931
18 86,981,083 86,981,200
19 86,984,754 86,984,848
20 86,985,576 86,987,799
21 86,994,841 86,994,980
22 86,997,563 86,997,758
23 87,012,513 87,013,976
CDS
Exon number Type Start Stop
1 CDS 86,942,237 86,942,308
2 CDS 86,951,296 86,951,360
3 CDS 86,952,942 86,953,053
4 CDS 86,953,498 86,953,650
5 CDS 86,957,706 86,957,936
6 CDS 86,958,282 86,958,427
7 CDS 86,963,029 86,963,224
8 CDS 86,969,228 86,969,315
9 CDS 86,971,747 86,971,956
10 CDS 86,974,073 86,974,254
11 CDS 86,974,338 86,974,513
12 CDS 86,974,681 86,974,804
13 CDS 86,975,728 86,975,886
14 CDS 86,976,153 86,976,290
15 CDS 86,976,553 86,976,699
16 CDS 86,977,580 86,977,759
17 CDS 86,977,848 86,977,931
18 CDS 86,981,083 86,981,200
19 CDS 86,984,754 86,984,848
20 CDS 86,985,576 86,987,799
21 CDS 86,994,841 86,994,980
22 CDS 86,997,563 86,997,758
23 CDS 87,012,513 87,012,547
Other genome
Genome Chromosome Start End Links
hg19 chr2 87,169,241 87,241,099 Link
CDS sequence
ATGAGGCGCAGCAAGGCCTACGGGGAGCGGTACGTCGCCTCGGTGCAGGGCTCCGCCCCGTCGCCTGGAAAGAAGTTGAGAGGATTCTATTTTGCAAAGCTGTATTATGAAGCTAAAGAATATGATCTTGCTAAAAAATACGTATGTACTTACCTTAGTGTGCAAGAGAGGGATCCCAGAGCTCACAGATTTCTGGGTCTTCTTTATGAATTGGAAGAAAACACAGAGAAAGCCGTTGAATGTTACAGGCGTTCACTGGAATTAAACCCACCACAAAAAGATCTTGTGTTGAAGATTGCAGAATTGCTTTGTAAAAATGATGTTACTGATGGAAGAGCAAAATACTGGGTTGAAAGGGCAGCGAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGGAACATCTTCTAGATTGTGAAGGTGAAGATGGATGGAATAAACTTTTTGACTGGATTCAGTCAGAACTTTATGTAAGACCTGATGACGTCCATATGAACATCCGGCTAGTGGAGTTGTATCGCTCAAATAAAAGATTGAAGGATGCTGTGGCCCGCTGCCATGAGGCAGAGAGGAACATAGCTTTGCGTTCAAGTTTAGAGTGGAATTCGTGTGTTGTACAGACCCTTAAGGAATATCTGGAGTCTTTACAGTGTTTGGAGTCTGATAAAAGTGACTGGCGAGCAACCAATACAGACTTACTGCTGGCCTATGCTAATCTTATGCTTCTTACGCTTTCCACTAGAGATGTGCAGGAAAGTAGAGAATTACTGGAAAGTTTTGATAGTGCTCTTCAGTCTGCAAAATCTTCTTTGGGTGGAAATGATGAACTGTCAGCTACTTTCTTAGAAATGAAAGGACATTTCTACATGCATGCTGGTTCTCTGCTCTTGAAGATGGGTCAGCATGGTAATAATGTTCAATGGCAAGCTCTTTCTGAGCTGGCTGCATTGTGCTATGTCATAGCATTTCAGGTTCCAAGACCAAAGATTAAATTAATAAAAGGTGAAGCTGGACAAAATCTGCTGGAAATGATGGCCTGTGACCGACTGAGCCAATCAGGGCATATGTTGCTAAACTTAAGTCGTGGCAAGCAAGATTTTTTAAAAGAGGTTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGTGTTATATAATGCTCTGTTTTCTAGTCAGTCATCTAAGGATACATCTTTTCTTGGTAGCGATGATATTGGAAACATTGATGTACAAGAACCAGAGCTTGAAGATTTGGCTAGATACGATGTTGGTGCTATTCAAGCACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTACAGTGGAATTCATTGCCTGCTTTACCTGGAATCCGAAAATGGCTAAAACAGCTTTTCCATCATTTGCCCCAGGAAACCTCAAGGCTTGAAACAAATGCACCTGAATCAATATGTATTTTAGATCTTGAAGTATTTCTCCTTGGAGTAGTATATACCAGCCACTTACAATTAAAGGAGAAATGTAATTCTCACCACAGCTCCTATCAGCCGTTATGCCTGCCCCTTCCTGTGTGTAAACGGCTTTGTACAGAGAGACAAAAATCTTGGTGGGATGCGGTTTGTACTCTGATTCACAGAAAAGCAGTACCTGGAAACTCAGCAGAATTGAGACTTGTAGTTCAGCATGAAATAAACACTCTAAGAGCCCAGGAAAAACATGGCCTTCAACCTGCTCTGCTTGTACATTGGGCAAAATGCCTTCAGAAAATGGGCAGGGGTCTTAATTCTTCTTATGATCAACAAGAATACATAGGGAGAAGTGTTCATTATTGGAAGAAAGTTTTGCCATTGTTGAAGATAATAAAGAAGAACAGTATTCCTGAACCTATTGATCCTCTGTTTAAACATTTTCATAGTGTAGACATTCAGGCATCAGAAATTGTTGAGTATGAAGAAGATGCACACATAACTTTTGCTATATTGGATGCAGTACATGGAAATATAGAAGATGCTGTGACTGCTTTTGAATCTATAAAAAGTGTTGTTTCTTATTGGAATCTTGCACTGATTTTTCACAGGAAAGCAGAAGACATTGAAAATGATGCCGTTTTTCCTGAAGAACAAGAAGAATGCAAAAATTATCTGAGAAAGACCAGGGACTACCTAATAAAGATTATAGATGACAGTGATTCAAATCTTTCAGTGGTCAAGAAATTGCCTGTGCCCCTGGAGTCTGTAAAAGAGATGCTTAAGTCAGTCATGCAGGAACTCGAAGACTATAGTGAAGGAGGTCCTCTCTATAAAAATGGTTCTTTGCGAAATGCAGATTCAGAAATAAAACATTCTACACCATCTCCTACCAAATATTCACTATCACCAAGTAAAAGTTACAAGTATTCTCCCAAAACACCACCTCGATGGGCAGAAGATCAGAATTCTTTACGGAAAATGATTTGCCAAGAAGTAAAGGCCATTACGAAACTAAATAGCAGTAAGTCAGCATCCCGTCATCGTTGGCCCACAGAGAATTATGGACCAGACTCGGTGCCTGATGGATATCAGGGGTCACAGACATTTCATGGGGCTCCACTAACAGTTGCAACTACTGGCCCTTCAGTATATTATAGTCAGTCACCAGCATATAATTCCCAGTATCTTCTCAGACCAGCAGCTAATGTTACTCCCACAAAGGGTTCTTCTAATACAGAATTTAAGTCAACCAAAGAAGGATTTTCCATCGCTGTGTCTGCTGATGGATTTAAATTTGGCATTTCGGAACCAGGAAATCAAGAAAAGAAAAGTGAAAAGCCTCTTGAAAATGATACTGGCTTCCAGGCTCAGGATATTAGTGGCCAGAAGAATGGCCGTGGTGTGATTTTTGGCCAAACAAGTAGCACTTTTACATTTGCAGATGTTGCAAAATCAACTTCAGGAGAAGGATTTCAGTTTGGCAAAAAAGACCCCAATTTCAAGGGATTTTCAGGTGCTGGAGAAAAATTATTCTCATCACAATGCGGTAAAATGGCCAATAAAGCAAACACTTCCGGTGACTTTGAGAAAGATGATGATGCCTGTAAGACTGAGGACAGCGATGACATCCATTTTGAACCAGTAGTTCAAATGCCTGAAAAAGTAGAACTTGTAACAGGAGAAGAAGGTGAAAAAGTTCTGTATTCACAGGGGGTAAAACTATTTAGATTTGATGCTGAGATAAGTCAGTGGAAAGAAAGGGGCTTGGGGAACTTAAAAATTCTCAAAAATGAGGTCAATGGCAAACCAAGAATGCTGATGCGAAGAGACCAAGTACTAAAAGTGTGTGCTAATCATTGGATAACAACTACAATGAACCTGAAGCCCCTCTCTGGATCAGATAGAGCATGGATGTGGTTAGCCAGTGATTTCTCTGATGGTGATGCCAAACTAGAGCGGTTGGCAGCACAATTTAAAACACCAGAGCTGGCTGAAGAATTCAAGCAGAAATTTGAGGAATGCCAGCGGCTTCTGTTAGACATACCACTTCAAACTCCCCATAAACTTGTAGATACTGGCAGAGCTGCCAAGCTAATACAGAGAGCTGAAGAAATGAAGAGTGGACTGAAAGATTTCAAAACGTTTTTGACAAATGATCAAACAAAAGTCACTGAGGAAGAAAATAAGGGTTCAGGTACAGGTGCAGCCGGTGCCTCAGACACAACAATAAAACCCAATCCTGAAAACACTGGGCCCACATTAGAATGGGATAACTATGATTTAAGGGAAGATGCTTTGGATGATAATGTTAGTAGTAGCTCAGTACATGATTCTCCGTTGGCAAGTAGCCCTGTGAGAAAAAATATTTTCCGCTTTGATGAGTCAACAACAGGATTTAACTTCAGTTTTAAATCTGCTTTGAGTCTATCTAAGTCTCCTGCCAAGTTGAATCAGAGTGGGACTTCAGTTGGCACTGATGAAGAATCTGATGTTACTCAAGAAGAAGAGAGAGATGGACAGTACTTTGAACCTGTTGTTCCTTTACCTGATCTAGTTGAAGTATCCAGTGGTGAGGAAAATGAACAAGTTGTTTTTAGTCACAGGGCAGAACTCTACAGATATGATAAAGATGTTGGTCAATGGAAAGAAAGGGGCATTGGTGATATAAAGATTTTACAGAATTATGATAATAAGCAAGTTCGTATAGTGATGAGAAGGGACCAAGTATTAAAACTTTGTGCCAATCACAGAATAACTCCAGACATGAGTTTGCAAAATATGAAAGGGACAGAAAGAGTATGGGTGTGGACTGCATGTGATTTTGCAGATGGAGAAAGAAAAGTAGAGCATTTAGCTGTTCGTTTTAAACTACAGGATGTTGCAGACTCATTTAAGAAAATTTTTGATGAAGCAAAAACAGCCCAGGAAAAAGATTCTTTGATAACACCTCATGTTTCTCGGTCAAGCACTCCCAGAGAGTCACCATGTGGCAAAATTGCTGTAGCTGTATTAGAAGAAACCACAAGAGAGAGGACAGATGTTATTCAGGGTGATGATGTAGCAGATGCAGCTTCAGAAGTTGAAGTGTCTAGCACATCTGAAACAACAACAAAAGCAGTGGTTTCTCCTCCAAAGTTTGTATTTGGTTCAGAGTCTGTTAAAAGAATTTTTAGTAGTGAAAAATCAAACCCATTTGCATTTGGCAACAGTTCTGCCACTGGGTCTTTGTTTGGATTTAGTTTTAATGCACCTTTGAAAAGTAACGATAGTGAAACTAGTTCAGTAGCCCAGAGTGGATCTGAAAGCAAAGTGGAACCTAAAAAATGTGAACTGTCAAAGAACTCTGATATCGAACAGTCTTCAGATAGCAAAGTCAAAAATCTCTCTGCTTCCTTTCCAATGGAAGAATCTTCAATCAACTACACATTTAAAACACCAGAAAAGGAGCCTCCATTATGGCATGCTGAATTTACCAAAGAAGAATTGGTTCAGAAGCTCAGTTCCACCACAAAAAGTGCAGATCAGTTAAACGGCCTGCTTCGGGAAACAGAGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAGCTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAGGTCTTCAAGAAACCTCCATACCCAAGAAAAAATAG
Amino sequence
MRRSKAYGERYVASVQGSAPSPGKKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYELEENTEKAVECYRRSLELNPPQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCHEAERNIALRSSLEWNSCVVQTLKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDELSATFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDRLSQSGHMLLNLSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLARYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLKQLFHHLPQETSRLETNAPESICILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNSAELRLVVQHEINTLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDAVFPEEQEECKNYLRKTRDYLIKIIDDSDSNLSVVKKLPVPLESVKEMLKSVMQELEDYSEGGPLYKNGSLRNADSEIKHSTPSPTKYSLSPSKSYKYSPKTPPRWAEDQNSLRKMICQEVKAITKLNSSKSASRHRWPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTKEGFSIAVSADGFKFGISEPGNQEKKSEKPLENDTGFQAQDISGQKNGRGVIFGQTSSTFTFADVAKSTSGEGFQFGKKDPNFKGFSGAGEKLFSSQCGKMANKANTSGDFEKDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLERLAAQFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDNVSSSSVHDSPLASSPVRKNIFRFDESTTGFNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSSTSETTTKAVVSPPKFVFGSESVKRIFSSEKSNPFAFGNSSATGSLFGFSFNAPLKSNDSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKVKNLSASFPMEESSINYTFKTPEKEPPLWHAEFTKEELVQKLSSTTKSADQLNGLLRETEATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQGLQETSIPKKK*