ENST00000413409.6 PTPRC

Information
Transcript ID
ENST00000413409.6
Genome
hg19
Position
chr1:198,608,227-198,664,300
Strand
+
CDS length
264
Amino acid length
88
Gene symbol
PTPRC
Gene type
protein-coding
Gene description
protein tyrosine phosphatase receptor type C
Gene Entrez Gene ID
5788
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 198,608,227 198,608,267
2 198,608,356 198,608,471
3 198,661,476 198,661,502
4 198,663,147 198,664,300
CDS
Exon number Type Start Stop
2 CDS 198,608,399 198,608,471
3 CDS 198,661,476 198,661,502
4 CDS 198,663,147 198,663,310
Other genome
Genome Chromosome Start End Links
hg38 chr1 198,639,097 198,695,171 Link
CDS sequence
ATGACCATGTATTTGTGGCTTAAACTCTTGGCATTTGGCTTTGCCTTTCTGGACACAGAAGTATTTGTGACAGGGCAAAGCCCAACACCTTCCCCCACTGGCCATCTGCAAGCTGAGGAGCAAGGAAGCCAATCCAAGTCACCAAACCTCAAAAGTAGGGAAGCTGACAGTTCAGCCTTCAGTTGGTGGCCAAAGGCCCGAGAGCCCCTCACAAACCACTGGAGTAAGTCCAAGAGTCCAAAAGCTGAGGAACTTGGAGTCTGA
Amino sequence
MTMYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGHLQAEEQGSQSKSPNLKSREADSSAFSWWPKAREPLTNHWSKSKSPKAEELGV*