PTPRC protein tyrosine phosphatase receptor type C
Information
- Symbol
- PTPRC
- Type
- protein-coding
- Description
- protein tyrosine phosphatase receptor type C
- Entrez Gene ID
- 5788
- Genome
- hg19
- Position
- chr1:198,608,170-198,726,605
- Genome
- hg38
- Position
- chr1:198,639,040-198,757,476
- MIM
- 151460 OMIM
- HGNC
- HGNC:9666 HGNC
- Ensembl
- ENSG00000081237 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Pathogenic | 0 | 32 |
| Likely pathogenic | 0 | 32 |
| Benign | 0 | 146 |
| Likely benign | 0 | 1,294 |
| Conflicting classifications of pathogenicity | 0 | 30 |
| Uncertain significance | 0 | 658 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
154 |
 |
1,984 |
 |
8 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | B220 |
| SYNONYM | CD45 |
| SYNONYM | CD45R |
| SYNONYM | GP180 |
| SYNONYM | IMD105 |
| SYNONYM | L-CA |
| SYNONYM | LCA |
| SYNONYM | LY5 |
| SYNONYM | T200 |
| MIM | 151460 OMIM |
| HGNC | HGNC:9666 HGNC |
| Ensembl | ENSG00000081237 Ensembl |
| AllianceGenome | HGNC:9666 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000367364.5 | hg38 | chr1 | 198,639,097 | 198,693,206 | 54,110 |
| ENST00000348564.11 | hg38 | chr1 | 198,638,968 | 198,757,283 | 118,316 |
| ENST00000442510.8 | hg38 | chr1 | 198,639,040 | 198,757,476 | 118,437 |
| ENST00000413409.6 | hg38 | chr1 | 198,639,097 | 198,695,171 | 56,075 |
| ENST00000697632.1 | hg38 | chr1 | 198,639,096 | 198,757,181 | 118,086 |
| ENST00000697631.1 | hg38 | chr1 | 198,639,095 | 198,757,158 | 118,064 |
| ENST00000348564.11 | hg19 | chr1 | 198,608,098 | 198,726,412 | 118,315 |
| ENST00000367364.5 | hg19 | chr1 | 198,608,227 | 198,662,335 | 54,109 |
| ENST00000413409.6 | hg19 | chr1 | 198,608,227 | 198,664,300 | 56,074 |
| ENST00000442510.8 | hg19 | chr1 | 198,608,170 | 198,726,605 | 118,436 |
| ENST00000697631.1 | hg19 | chr1 | 198,608,225 | 198,726,287 | 118,063 |
| ENST00000697632.1 | hg19 | chr1 | 198,608,226 | 198,726,310 | 118,085 |
| Key | Value |
|---|---|
| strand | + |
| start | 198,608,097 |
| Gene Symbol | PTPRC |
| Entrez GeneId | 5,788 |
| Chr Band | 1q31-q32 |
| end | 198,726,604 |
| chr | chr1 |
| Name | protein tyrosine phosphatase, receptor type, C |
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