ENST00000006658.11 SPATA20

Information
Transcript ID
ENST00000006658.11
Genome
hg38
Position
chr17:50,547,174-50,555,852
Strand
+
CDS length
2,409
Amino acid length
803
Gene symbol
SPATA20
Gene type
protein-coding
Gene description
spermatogenesis associated 20
Gene Entrez Gene ID
64847
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 50,547,174 50,547,285
2 50,547,720 50,547,767
3 50,548,283 50,548,453
4 50,548,554 50,548,618
5 50,548,810 50,548,964
6 50,549,043 50,549,186
7 50,549,286 50,549,487
8 50,549,985 50,550,115
9 50,550,208 50,550,312
10 50,550,536 50,550,610
11 50,550,708 50,550,917
12 50,550,998 50,551,190
13 50,551,511 50,551,679
14 50,551,969 50,552,180
15 50,554,251 50,554,450
16 50,555,232 50,555,312
17 50,555,492 50,555,852
CDS
Exon number Type Start Stop
1 CDS 50,547,209 50,547,285
2 CDS 50,547,720 50,547,767
3 CDS 50,548,283 50,548,453
4 CDS 50,548,554 50,548,618
5 CDS 50,548,810 50,548,964
6 CDS 50,549,043 50,549,186
7 CDS 50,549,286 50,549,487
8 CDS 50,549,985 50,550,115
9 CDS 50,550,208 50,550,312
10 CDS 50,550,536 50,550,610
11 CDS 50,550,708 50,550,917
12 CDS 50,550,998 50,551,190
13 CDS 50,551,511 50,551,679
14 CDS 50,551,969 50,552,180
15 CDS 50,554,251 50,554,450
16 CDS 50,555,232 50,555,312
17 CDS 50,555,492 50,555,662
Other genome
Genome Chromosome Start End Links
hg19 chr17 48,624,535 48,633,213 Link
CDS sequence
ATGCTGGGCGCGCGGGCCTGGTTGGGCCGCGTCCTTCTGCTGCCCCGCGCCGGTGCAGGCCTCGCCGCGAGCCGCAGGTGTCCTGGAGTCTGGCCCAGGACCTGGCCCCACAGGAGTCCCAGCAGGGGTAGCTCCTCCCGGGACAAGGACCGAAGTGCGACGGTCAGTAGTTCAGTGCCCATGCCTGCTGGAGGGAAAGGAAGCCATCCTTCATCTACACCCCAGAGGGTCCCCAACCGCCTGATCCACGAGAAGTCACCATACCTCCTACAACATGCCTACAATCCTGTGGACTGGTACCCCTGGGGACAGGAAGCCTTCGACAAGGCCAGGAAGGAAAACAAGCCGATTTTCCTCTCAGTCGGGTACTCCACCTGCCACTGGTGCCACATGATGGAAGAGGAGTCCTTCCAGAATGAGGAGATTGGCCGCCTGCTCAGTGAGGACTTTGTGAGTGTGAAGGTAGACCGTGAGGAGCGGCCTGACGTGGACAAGGTGTACATGACGTTCGTGCAGGCCACCAGCAGCGGCGGGGGCTGGCCCATGAATGTGTGGCTGACTCCCAACCTCCAGCCCTTTGTCGGGGGCACCTATTTCCCTCCTGAGGATGGCTTGACCCGAGTCGGCTTCCGCACAGTGTTGCTGAGAATACGAGAACAGTGGAAACAGAACAAGAACACCCTGCTAGAAAATAGCCAGCGTGTCACCACTGCCCTGCTGGCCCGATCAGAGATCAGCGTGGGTGACCGCCAGCTGCCGCCCTCTGCCGCCACCGTGAACAATCGCTGCTTCCAGCAGCTGGATGAGGGCTATGATGAGGAATACGGTGGCTTCGCTGAGGCCCCCAAGTTTCCCACGCCGGTGATCCTGAGCTTCCTGTTCTCCTACTGGCTCAGCCATCGACTGACTCAGGATGGCTCTCGGGCCCAGCAGATGGCCTTGCATACCCTGAAAATGATGGCTAACGGGGGCATCCGGGACCATGTGGGGCAGGGCTTTCACCGCTACTCCACAGACCGCCAGTGGCACGTCCCTCACTTTGAGAAGATGCTCTATGACCAGGCACAGCTCGCTGTGGCCTATTCGCAGGCCTTCCAGCTCTCTGGTGATGAATTCTACTCTGACGTGGCCAAAGGCATCCTGCAGTACGTGGCTCGGAGCCTGAGCCACCGGTCCGGAGGCTTCTATAGCGCAGAAGATGCAGACTCGCCCCCAGAGCGGGGCCAGCGGCCCAAAGAGGGCGCCTACTATGTGTGGACGGTCAAAGAGGTTCAGCAGCTCCTCCCGGAGCCTGTGTTGGGTGCCACCGAGCCGCTGACCTCAGGCCAGCTCCTCATGAAGCACTACGGCCTCACAGAGGCTGGTAACATCAGCCCCAGTCAGGACCCCAAGGGGGAGCTGCAGGGCCAGAATGTGCTGACCGTCCGGTACTCGCTGGAGCTGACTGCTGCCCGCTTTGGCTTGGATGTGGAGGCCGTGCGGACCTTGCTCAATTCAGGGCTGGAGAAGCTCTTCCAGGCCCGGAAGCATCGGCCCAAGCCGCACCTGGACAGCAAGATGCTGGCTGCCTGGAATGGCTTGATGGTGTCAGGCTATGCTGTGACTGGGGCTGTCCTGGGCCAAGACAGGCTGATCAACTATGCCACCAATGGTGCCAAGTTCCTGAAGCGGCACATGTTTGATGTGGCCAGTGGCCGCCTGATGCGGACCTGCTACACCGGCCCTGGGGGGACTGTGGAGCACAGCAACCCACCCTGCTGGGGCTTCCTGGAGGACTACGCCTTCGTGGTGCGGGGCCTGCTGGACCTGTATGAGGCCTCACAGGAGAGTGCGTGGCTCGAGTGGGCTCTGCGGCTGCAGGACACACAGGACAAGCTCTTTTGGGACTCCCAGGGTGGCGGCTACTTCTGCAGTGAGGCTGAGCTGGGGGCTGGCCTGCCCCTGCGTCTGAAGGACGACCAGGATGGAGCAGAGCCCAGCGCCAATTCCGTGTCAGCCCACAACCTGCTCCGGCTGCATGGCTTCACGGGCCACAAGGACTGGATGGACAAGTGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCGTGTCCCGGTGGCGTTGCCCGAGATGGTCCGCGCCCTCTCAGCCCAGCAGCAGACCCTCAAGCAGATCGTGATCTGTGGAGACCGTCAGGCCAAGGACACCAAGGCCCTGGTGCAGTGCGTCCACTCTGTCTACATTCCTAACAAGGTGCTGATTCTGGCTGATGGGGACCCCTCGAGCTTCCTGTCCCGCCAGCTGCCTTTCCTGAGTACCCTCCGACGGTTGGAAGACCAGGCCACTGCATATGTGTGTGAGAATCAAGCCTGCTCAGTGCCCATCACTGATCCCTGCGAATTACGAAAACTACTACATCCATGA
Amino sequence
MLGARAWLGRVLLLPRAGAGLAASRRCPGVWPRTWPHRSPSRGSSSRDKDRSATVSSSVPMPAGGKGSHPSSTPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQWKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATVNNRCFQQLDEGYDEEYGGFAEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQLAVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGGFYSAEDADSPPERGQRPKEGAYYVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLTEAGNISPSQDPKGELQGQNVLTVRYSLELTAARFGLDVEAVRTLLNSGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQDRLINYATNGAKFLKRHMFDVASGRLMRTCYTGPGGTVEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDKLFWDSQGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKVLILADGDPSSFLSRQLPFLSTLRRLEDQATAYVCENQACSVPITDPCELRKLLHP*