SYS1 SYS1 golgi trafficking protein

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: SYS1
Type: protein-coding
Description: SYS1 golgi trafficking protein
Entrez Gene ID: 90196
Genome: hg19
Position: chr20:43,991,796-43,997,849
Genome: hg38
Position: chr20:45,363,156-45,369,209
MIM: 612979 OMIM
HGNC: HGNC:16162 HGNC
Ensembl: ENSG00000204070 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Likely benign	0	4
not provided	1	0
Uncertain significance	0	22

Ranking

	ClinVar
	0
	0
	0
	26
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	C20orf169
SYNONYM	dJ453C12.4
SYNONYM	dJ453C12.4.1
MIM	612979 OMIM
HGNC	HGNC:16162 HGNC
Ensembl	ENSG00000204070 Ensembl
AllianceGenome	HGNC:16162

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000372727.5	hg38	chr20	45,361,937	45,367,214	5,278
ENST00000243918.10	hg38	chr20	45,363,156	45,369,209	6,054
ENST00000414310.5	hg38	chr20	45,361,951	45,367,225	5,275
ENST00000426004.5	hg38	chr20	45,363,139	45,376,798	13,660
ENST00000372727.5	hg19	chr20	43,990,577	43,995,854	5,278
ENST00000414310.5	hg19	chr20	43,990,591	43,995,865	5,275
ENST00000426004.5	hg19	chr20	43,991,779	44,005,438	13,660
ENST00000243918.10	hg19	chr20	43,991,796	43,997,849	6,054

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