PTPN5 protein tyrosine phosphatase non-receptor type 5
Information
- Symbol
- PTPN5
- Type
- protein-coding
- Description
- protein tyrosine phosphatase non-receptor type 5
- Entrez Gene ID
- 84867
- Genome
- hg19
- Position
- chr11:18,749,475-18,813,345
- Genome
- hg38
- Position
- chr11:18,727,928-18,791,798
- MIM
- 176879 OMIM
- HGNC
- HGNC:9657 HGNC
- Ensembl
- ENSG00000110786 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Likely benign | 0 | 4 |
| not provided | 0 | 28 |
| Uncertain significance | 0 | 74 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
78 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | PTPSTEP |
| SYNONYM | STEP |
| SYNONYM | STEP61 |
| MIM | 176879 OMIM |
| HGNC | HGNC:9657 HGNC |
| Ensembl | ENSG00000110786 Ensembl |
| AllianceGenome | HGNC:9657 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000396166.7 | hg38 | chr11 | 18,727,930 | 18,730,744 | 2,815 |
| ENST00000396168.1 | hg38 | chr11 | 18,727,932 | 18,791,640 | 63,709 |
| ENST00000477854.5 | hg38 | chr11 | 18,727,928 | 18,743,842 | 15,915 |
| ENST00000358540.7 | hg38 | chr11 | 18,727,928 | 18,791,798 | 63,871 |
| ENST00000396170.5 | hg38 | chr11 | 18,727,930 | 18,792,721 | 64,792 |
| ENST00000477854.5 | hg19 | chr11 | 18,749,475 | 18,765,389 | 15,915 |
| ENST00000358540.7 | hg19 | chr11 | 18,749,475 | 18,813,345 | 63,871 |
| ENST00000396166.7 | hg19 | chr11 | 18,749,477 | 18,752,291 | 2,815 |
| ENST00000396170.5 | hg19 | chr11 | 18,749,477 | 18,814,268 | 64,792 |
| ENST00000396168.1 | hg19 | chr11 | 18,749,479 | 18,813,187 | 63,709 |
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