HOXA13 homeobox A13

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: HOXA13
Type: protein-coding
Description: homeobox A13
Entrez Gene ID: 3209
Genome: hg19
Position: chr7:27,233,983-27,239,710
Genome: hg38
Position: chr7:27,194,364-27,200,091
MIM: 142959 OMIM
HGNC: HGNC:5102 HGNC
Ensembl: ENSG00000106031 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Pathogenic	4	14
Likely pathogenic	1	6
Benign	0	28
Likely benign	0	104
Conflicting classifications of pathogenicity	0	2
no classification for the single variant	0	2
Uncertain significance	0	144

Ranking

	ClinVar
	0
	0
	38
	230
	20

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

Search Word

Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
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Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	HOX1
SYNONYM	HOX1J
MIM	142959 OMIM
HGNC	HGNC:5102 HGNC
Ensembl	ENSG00000106031 Ensembl
AllianceGenome	HGNC:5102

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000649031.1	hg38	chr7	27,194,364	27,200,091	5,728
ENST00000649031.1	hg19	chr7	27,233,983	27,239,710	5,728

Key	Value
strand	-
start	27,236,498
Gene Symbol	HOXA13
Entrez GeneId	3,209
Chr Band	7p15-p14.2
end	27,239,724
chr	chr7
Name	homeo box A13

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