chrX:78042789:G>T Detail (hg38) (ATP7A, PGK1)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chrX:77,298,287-77,298,287 View the variant detail on this assembly version.
hg38	chrX:78,042,789-78,042,789

HGVS

ATP7A
PGK1

Type	Transcript	Protein
RefSeq	NM_000052.6:c.4005+1G>T
	NM_001282224.1:c.4035+1G>T
Ensemble	ENST00000341514.11:c.4005+1G>T
	ENST00000343533.10:c.4035+1G>T
	ENST00000685264.1:c.4005+1G>T
	ENST00000686033.1:c.3810+1G>T
	ENST00000686133.1:c.4005+1G>T
	ENST00000686543.1:c.3771+1G>T
	ENST00000687086.1:c.4005+1G>T
	ENST00000689767.1:c.4098+1G>T
	ENST00000692908.1:c.3771+1G>T

Type	Transcript	Protein
RefSeq
Ensemble	ENST00000644362.1:c.-19-67078G>T

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

ATP7A
PGK1

Type	Database	ID	Link
Gene	MIM	300011	OMIM
	HGNC	869	HGNC
	Ensembl	ENSG00000165240	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Type	Database	ID	Link
Gene	MIM	311800	OMIM
	HGNC	8896	HGNC
	Ensembl	ENSG00000102144	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2013-02-08	criteria provided, single submitter	Menkes kinky-hair syndrome	germline	Detail
Likely pathogenic	2022-10-31	criteria provided, single submitter	Cutis laxa, X-linked,X-linked distal spinal muscular atrophy type 3,Menkes kinky-hair syndrome	germline	Detail
Likely pathogenic	2022-10-31	criteria provided, single submitter	Cutis laxa, X-linked,X-linked distal spinal muscular atrophy type 3,Menkes kinky-hair syndrome	germline	Detail
Likely pathogenic	2022-10-31	criteria provided, single submitter	Cutis laxa, X-linked,X-linked distal spinal muscular atrophy type 3,Menkes kinky-hair syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.606	Menkes Kinky Hair Syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000052.7(ATP7A):c.4005+1G>T AND Menkes kinky-hair syndrome	ClinVar	Detail
NM_000052.7(ATP7A):c.4005+1G>T AND multiple conditions	ClinVar	Detail
NM_000052.7(ATP7A):c.4005+1G>T AND multiple conditions	ClinVar	Detail
NM_000052.7(ATP7A):c.4005+1G>T AND multiple conditions	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs797045391 dbSNP
Genome: hg38
Position: chrX:78,042,789-78,042,789
Variant Type: snv
Reference Allele: G
Alternative Allele: T

Genome browser