chr9:134396900:T>C Detail (hg38) (RXRA)

Go to:

Information

Genome

Assembly	Position
hg19	chr9:137,288,746-137,288,746 View the variant detail on this assembly version.
hg38	chr9:134,396,900-134,396,900

Summary

Links

Type	Database	ID	Link
Gene	MIM	180245	OMIM
	HGNC	10477	HGNC
	Ensembl	ENSG00000186350	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar	tgv37910417	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

[No Data.]

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.007	measles	A significant association was found between lower measles-specific IFN-γ Enzyme-...	BeFree	22082653	Detail
<0.001	measles	A significant association was found between lower measles-specific IFN-γ Enzyme-...	BeFree	22082653	Detail

Annotation

Descrption	Source	Links
A significant association was found between lower measles-specific IFN-γ Enzyme-linked immunosorbent...	DisGeNET	Detail
A significant association was found between lower measles-specific IFN-γ Enzyme-linked immunosorbent...	DisGeNET	Detail

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs10776909 dbSNP
Genome: hg38
Position: chr9:134,396,900-134,396,900
Variant Type: snv
Reference Allele: T
Alternative Allele: C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): rs10776909
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 0.7318
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 12265
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 16760

Genome browser