chr8:127705823:G>T Detail (hg38)

Information

Genome

Assembly Position
hg19 chr8:128,718,068-128,718,068 View the variant detail on this assembly version.
hg38 chr8:127,705,823-127,705,823

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.301
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.129 Malignant neoplasm of urinary bladder Three previously established bladder cancer risk-associated SNPs (rs798766 in TA... BeFree 24155119 Detail
<0.001 Carcinoma of bladder Three previously established bladder cancer risk-associated SNPs (rs798766 in TA... BeFree 24155119 Detail
0.004 Carcinoma of bladder Three previously established bladder cancer risk-associated SNPs (rs798766 in TA... BeFree 24155119 Detail
0.123 Malignant neoplasm of urinary bladder Three previously established bladder cancer risk-associated SNPs (rs798766 in TA... BeFree 24155119 Detail
0.003 Carcinoma of bladder We genotyped rs9642880 G&gt;T on 8q24 and rs710521 A&gt;G on 3q28 in a two-stage... BeFree 19369583 Detail
0.008 Malignant neoplasm of urinary bladder We genotyped rs9642880 G&gt;T on 8q24 and rs710521 A&gt;G on 3q28 in a two-stage... BeFree 19369583 Detail
0.003 Carcinoma of bladder Recently, a genome-wide single nucleotide polymorphism association study has ide... BeFree 19801959 Detail
0.008 Malignant neoplasm of urinary bladder [Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.] GAD 18794855 Detail
0.007 Bladder Neoplasm [A multi-stage genome-wide association study of bladder cancer identifies multip... GAD 20972438 Detail
0.107 Malignant neoplasm of urinary bladder [Susceptibility to urinary bladder cancer: relevance of rs9642880T, GSTM1 0/0 an... GAD 19801959 Detail
0.027 Carcinoma of bladder Therefore, the degree to which rs9642880[T] and GSTM1 0/0 confer susceptibility ... BeFree 19801959 Detail
0.107 Malignant neoplasm of urinary bladder Therefore, the degree to which rs9642880[T] and GSTM1 0/0 confer susceptibility ... BeFree 19801959 Detail
0.008 Malignant neoplasm of urinary bladder Recently, a genome-wide single nucleotide polymorphism association study has ide... BeFree 19801959 Detail
0.007 Bladder Neoplasm [Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.] GAD 18794855 Detail
0.007 Bladder Neoplasm [A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.] GAD 20348956 Detail
0.027 Carcinoma of bladder These findings suggest that seven bladder cancer risk-associated variants (rs964... BeFree 24740636 Detail
0.107 Malignant neoplasm of urinary bladder These findings suggest that seven bladder cancer risk-associated variants (rs964... BeFree 24740636 Detail
Annotation

Annotations

DescrptionSourceLinks
Three previously established bladder cancer risk-associated SNPs (rs798766 in TACC3, rs9642880 in MY... DisGeNET Detail
Three previously established bladder cancer risk-associated SNPs (rs798766 in TACC3, rs9642880 in MY... DisGeNET Detail
Three previously established bladder cancer risk-associated SNPs (rs798766 in TACC3, rs9642880 in MY... DisGeNET Detail
Three previously established bladder cancer risk-associated SNPs (rs798766 in TACC3, rs9642880 in MY... DisGeNET Detail
We genotyped rs9642880 G&gt;T on 8q24 and rs710521 A&gt;G on 3q28 in a two-stage case-control study ... DisGeNET Detail
We genotyped rs9642880 G&gt;T on 8q24 and rs710521 A&gt;G on 3q28 in a two-stage case-control study ... DisGeNET Detail
Recently, a genome-wide single nucleotide polymorphism association study has identified a sequence v... DisGeNET Detail
[Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.] DisGeNET Detail
[A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility lo... DisGeNET Detail
[Susceptibility to urinary bladder cancer: relevance of rs9642880T, GSTM1 0/0 and occupational expos... DisGeNET Detail
Therefore, the degree to which rs9642880[T] and GSTM1 0/0 confer susceptibility to urinary bladder c... DisGeNET Detail
Therefore, the degree to which rs9642880[T] and GSTM1 0/0 confer susceptibility to urinary bladder c... DisGeNET Detail
Recently, a genome-wide single nucleotide polymorphism association study has identified a sequence v... DisGeNET Detail
[Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.] DisGeNET Detail
[A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.] DisGeNET Detail
These findings suggest that seven bladder cancer risk-associated variants (rs9642880, rs2294008, rs7... DisGeNET Detail
These findings suggest that seven bladder cancer risk-associated variants (rs9642880, rs2294008, rs7... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs9642880 dbSNP
Genome
hg38
Position
chr8:127,705,823-127,705,823
Variant Type
snv
Reference Allele
G
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs9642880
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.3012
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
5048
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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