chr7:117592169:C>T Detail (hg38) (CFTR, CFTR-AS1)

Information

Genome

Assembly Position
hg19 chr7:117,232,223-117,232,223 View the variant detail on this assembly version.
hg38 chr7:117,592,169-117,592,169

HGVS

Type Transcript Protein
RefSeq NM_000492.3:c.2002C>T NP_000483.3:p.Arg668Cys
Ensemble ENST00000003084.11:c.2002C>T ENST00000003084.11:p.Arg668Cys
ENST00000648260.1:c.1402-10657C>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:<0.001
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Conflicting classifications of pathogenicity
Review star
Show details
Links
Type Database ID Link
Gene MIM 602421 OMIM
HGNC 1884 HGNC
Ensembl ENSG00000001626 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv30712649 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Conflicting interpretations of pathogenicity 2024-01-31 criteria provided, conflicting interpretations cystic fibrosis germline Detail
Conflicting interpretations of pathogenicity 2016-05-23 criteria provided, conflicting interpretations not specified germline Detail
Uncertain significance 2017-05-23 criteria provided, single submitter Hereditary pancreatitis,Congenital bilateral aplasia of vas deferens from CFTR mutation,cystic fibrosis,Bronchiectasis with or without elevated sweat chloride 1 unknown Detail
Uncertain significance 2017-05-23 criteria provided, single submitter Hereditary pancreatitis,Congenital bilateral aplasia of vas deferens from CFTR mutation,cystic fibrosis,Bronchiectasis with or without elevated sweat chloride 1 unknown Detail
Uncertain significance 2017-05-23 criteria provided, single submitter Hereditary pancreatitis,Congenital bilateral aplasia of vas deferens from CFTR mutation,cystic fibrosis,Bronchiectasis with or without elevated sweat chloride 1 unknown Detail
Uncertain significance 2017-05-23 criteria provided, single submitter Hereditary pancreatitis,Congenital bilateral aplasia of vas deferens from CFTR mutation,cystic fibrosis,Bronchiectasis with or without elevated sweat chloride 1 unknown Detail
Uncertain significance 2015-05-14 no assertion criteria provided germline Detail
Uncertain significance 2015-05-14 no assertion criteria provided germline Detail
Conflicting interpretations of pathogenicity 2024-04-01 criteria provided, conflicting interpretations not provided germline unknown Detail
Conflicting interpretations of pathogenicity 2023-10-11 criteria provided, conflicting interpretations CFTR-related disorder germline Detail
Pathogenic 2020-02-25 criteria provided, single submitter cystic fibrosis unknown Detail
Likely benign 2023-04-07 criteria provided, single submitter not specified germline Detail
Likely benign 2020-12-08 criteria provided, single submitter Hereditary pancreatitis germline Detail
CIViC
[No Data.]
DisGeNET
[No Data.]
Annotation

Annotations

DescrptionSourceLinks
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND Cystic fibrosis ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND not specified ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND multiple conditions ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND multiple conditions ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND multiple conditions ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND multiple conditions ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND Chronic sinusitis ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND Lung disease, non-specific ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND not provided ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND CFTR-related disorder ClinVar Detail
NM_000492.3(CFTR):c.[1327G>T;1727G>C;2002C>T] AND Cystic fibrosis ClinVar Detail
NM_000492.4(CFTR):c.[1727G>C;2002C>T] AND not specified ClinVar Detail
NM_000492.4(CFTR):c.2002C>T (p.Arg668Cys) AND Hereditary pancreatitis ClinVar Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs1800100 dbSNP
Genome
hg38
Position
chr7:117,592,169-117,592,169
Variant Type
snv
Reference Allele
C
Alternative Allele
T
Filtering Status (HGVD)
PASS
# of samples (HGVD)
1210
Mean of sample read depth (HGVD)
122.17
Standard deviation of sample read depth (HGVD)
63.48
Number of reference allele (HGVD)
2419
Number of alternative allele (HGVD)
1
Allele Frequency (HGVD)
4.1322314049586776E-4
Gene Symbol (HGVD)
CFTR
East Asian Chromosome Counts (ExAC)
8610
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
120152
Allele Counts in All Race (ExAC)
739
Heterozygous Counts in All Race (ExAC)
737
Homozygous Counts in All Race (ExAC)
1
Allele Frequency in All Race (ExAC)
0.006150542645981756
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