chr6:52185555:A>G Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:52,050,353-52,050,353 View the variant detail on this assembly version. |
| hg38 | chr6:52,185,555-52,185,555 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.283 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | liver carcinoma | Our results suggest that IL-17A rs4711998, IL-17A rs2275913, and IL-17F rs763780... | BeFree | 25429834 | Detail |
| <0.001 | Esophageal Neoplasms | Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased ri... | BeFree | 23895419 | Detail |
| <0.001 | Malignant neoplasm of esophagus | Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased ri... | BeFree | 23895419 | Detail |
| <0.001 | esophageal carcinoma | Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased ri... | BeFree | 23895419 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Our results suggest that IL-17A rs4711998, IL-17A rs2275913, and IL-17F rs763780 polymorphisms do no... | DisGeNET | Detail |
| Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased risk of esophageal can... | DisGeNET | Detail |
| Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased risk of esophageal can... | DisGeNET | Detail |
| Interleukin 17A rs4711998 A>G polymorphism was associated with a decreased risk of esophageal can... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs4711998 dbSNP
- Genome
- hg38
- Position
- chr6:52,185,555-52,185,555
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs4711998
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.2832
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 4747
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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