chr5:71718137:C>T Detail (hg38)

Information

Genome

Assembly Position
hg19 chr5:71,013,964-71,013,964 View the variant detail on this assembly version.
hg38 chr5:71,718,137-71,718,137

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.108
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Chronic schizophrenia Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs38573... BeFree 24564533 Detail
<0.001 Chronic schizophrenia Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs38573... BeFree 24564533 Detail
Annotation

Annotations

DescrptionSourceLinks
Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs3857384, rs11575893, rs16... DisGeNET Detail
Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs3857384, rs11575893, rs16... DisGeNET Detail
Gene
-
dbSNP
rs3857384 dbSNP
Genome
hg38
Position
chr5:71,718,137-71,718,137
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs3857384
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.1079
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
1809
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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