chr5:1254395:C>T Detail (hg38) (TERT)

Information

Genome

Assembly Position
hg19 chr5:1,254,510-1,254,510 View the variant detail on this assembly version.
hg38 chr5:1,254,395-1,254,395

HGVS

Type Transcript Protein
RefSeq NM_001193376.1:c.3268G>A NP_001180305.1:p.Val1090Met
NM_198253.2:c.3268G>A NP_937983.2:p.Val1090Met
Ensemble ENST00000310581.10:c.3268G>A ENST00000310581.10:p.Val1090Met
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Uncertain significance
Review star
Show details
Links
Type Database ID Link
Gene MIM 187270 OMIM
HGNC 11730 HGNC
Ensembl ENSG00000164362 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv256041343 TogoVar
COSMIC COSM6921323 COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2005-04-07 no assertion criteria provided Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1 germline Detail
not provided no assertion provided aplastic anemia unknown Detail
Uncertain significance 2020-10-25 criteria provided, single submitter interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2 germline unknown Detail
Uncertain significance 2020-10-25 criteria provided, single submitter interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2 germline unknown Detail
Uncertain significance 2019-05-28 criteria provided, single submitter interstitial lung disease 2 unknown Detail
Uncertain significance 2023-09-25 criteria provided, multiple submitters, no conflicts Dyskeratosis congenita, autosomal dominant 2 germline unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-05-12 criteria provided, single submitter acute myeloid leukemia,Dyskeratosis congenita, autosomal dominant 1,interstitial lung disease 2,Dyskeratosis congenita, autosomal dominant 2,Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1,aplastic anemia,Melanoma, cutaneous malignant, susceptibility to, 9 unknown Detail
Uncertain significance 2022-11-07 criteria provided, single submitter not provided germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.248 aplastic anemia NA CLINVAR Detail
0.240 Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1 NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND Pulmonary fibrosis and/or bone marrow failure, Telome... ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND Aplastic anemia ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND Interstitial lung disease 2 ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND Dyskeratosis congenita, autosomal dominant 2 ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND multiple conditions ClinVar Detail
NM_198253.3(TERT):c.3268G>A (p.Val1090Met) AND not provided ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs121918664 dbSNP
Genome
hg38
Position
chr5:1,254,395-1,254,395
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8566
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
119366
Allele Counts in All Race (ExAC)
7
Heterozygous Counts in All Race (ExAC)
7
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
5.8643164720272105E-5
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