chr3:38581170:C>T Detail (hg38) (SCN5A, LOC110121269)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:38,622,661-38,622,661 View the variant detail on this assembly version.
hg38	chr3:38,581,170-38,581,170

HGVS

SCN5A

Type	Transcript	Protein
RefSeq	NM_000335.4:c.2989G>A	NP_000326.2:p.Ala997Thr
	NM_198056.2:c.2989G>A	NP_932173.1:p.Ala997Thr
	NM_001099404.1:c.2989G>A	NP_001092874.1:p.Ala997Thr
	NM_001160160.1:c.2989G>A	NP_001153632.1:p.Ala997Thr
Ensemble	ENST00000333535.9:c.2989G>A	ENST00000333535.9:p.Ala997Thr
	ENST00000413689.6:c.2989G>A	ENST00000413689.6:p.Ala997Thr
	ENST00000414099.6:c.2989G>A	ENST00000414099.6:p.Ala997Thr
	ENST00000423572.7:c.2989G>A	ENST00000423572.7:p.Ala997Thr
	ENST00000449557.6:c.2989G>A	ENST00000449557.6:p.Ala997Thr
	ENST00000450102.6:c.2989G>A	ENST00000450102.6:p.Ala997Thr
	ENST00000455624.6:c.2989G>A	ENST00000455624.6:p.Ala997Thr

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Uncertain significance
Review star
Show details

Links

SCN5A

Type	Database	ID	Link
Gene	MIM	600163	OMIM
	HGNC	10593	HGNC
	Ensembl	ENSG00000183873	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Uncertain significance	2016-08-03	criteria provided, multiple submitters, no conflicts	Brugada syndrome	germline	Detail
Uncertain significance	2018-04-05	criteria provided, single submitter	Brugada syndrome,sudden infant death syndrome	unknown	Detail
Uncertain significance	2018-04-05	criteria provided, single submitter	Brugada syndrome,sudden infant death syndrome	unknown	Detail
Uncertain significance	2024-01-19	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail
Uncertain significance	2017-04-28	criteria provided, single submitter	Ventricular fibrillation, paroxysmal familial, type 1	germline	Detail
Uncertain significance	2017-04-28	criteria provided, single submitter	long QT syndrome 3	germline	Detail
Uncertain significance	2017-04-28	criteria provided, single submitter	dilated cardiomyopathy 1E	germline	Detail
Uncertain significance	2019-08-20	criteria provided, multiple submitters, no conflicts	Sick sinus syndrome 1	germline unknown	Detail
Uncertain significance	2017-04-28	criteria provided, single submitter	Progressive familial heart block, type 1A	germline	Detail
Uncertain significance	2024-02-05	criteria provided, multiple submitters, no conflicts	Cardiac arrhythmia	germline	Detail
Uncertain significance	2022-03-14	criteria provided, single submitter	cardiomyopathy	germline	Detail
Uncertain significance	2022-09-09	criteria provided, single submitter		germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.130	Congenital long QT syndrome	NA	CLINVAR		Detail
0.837	Brugada Syndrome (disorder)	NA	CLINVAR		Detail
0.440	long QT syndrome 3	NA	CLINVAR		Detail
0.386	sudden infant death syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Brugada syndrome	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND multiple conditions	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND multiple conditions	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND not provided	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Ventricular fibrillation, paroxysmal familial, type 1	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Long QT syndrome 3	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Dilated cardiomyopathy 1E	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Sick sinus syndrome 1	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Progressive familial heart block, type 1A	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Cardiac arrhythmia	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Cardiomyopathy	ClinVar	Detail
NM_000335.5(SCN5A):c.2989G>A (p.Ala997Thr) AND Cardiovascular phenotype	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs137854609 dbSNP
Genome: hg38
Position: chr3:38,581,170-38,581,170
Variant Type: snv
Reference Allele: C
Alternative Allele: T
East Asian Chromosome Counts (ExAC): 7646
East Asian Allele Counts (ExAC): 0
East Asian Heterozygous Counts (ExAC): 0
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 0.0
Chromosome Counts in All Race (ExAC): 104192
Allele Counts in All Race (ExAC): 13
Heterozygous Counts in All Race (ExAC): 13
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 1.2476965601965602E-4

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