chr3:37017508:C>T Detail (hg38) (MLH1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:37,058,999-37,058,999 View the variant detail on this assembly version.
hg38	chr3:37,017,508-37,017,508

HGVS

MLH1

Type	Transcript	Protein
RefSeq	NM_000249.3:c.793C>T	NP_000240.1:p.Arg265Cys
	NM_001167617.1:c.499C>T	NP_001161089.1:p.Arg167Cys
	NM_001167618.1:c.70C>T	NP_001161090.1:p.Arg24Cys
	NM_001258271.1:c.793C>T	NP_001245200.1:p.Arg265Cys
	NM_001258274.1:c.70C>T	NP_001245203.1:p.Arg24Cys
	NM_001258273.1:c.70C>T	NP_001245202.1:p.Arg24Cys
	NM_001167619.1:c.70C>T	NP_001161091.1:p.Arg24Cys
Ensemble	ENST00000231790.8:c.793C>T	ENST00000231790.8:p.Arg265Cys
	ENST00000435176.5:c.499C>T	ENST00000435176.5:p.Arg167Cys
	ENST00000441265.6:c.70C>T	ENST00000441265.6:p.Arg24Cys
	ENST00000450420.6:c.793C>T	ENST00000450420.6:p.Arg265Cys
	ENST00000455445.6:c.70C>T	ENST00000455445.6:p.Arg24Cys
	ENST00000456676.7:c.793C>T	ENST00000456676.7:p.Arg265Cys
	ENST00000458205.6:c.70C>T	ENST00000458205.6:p.Arg24Cys
	ENST00000466900.6:c.70C>T	ENST00000466900.6:p.Arg24Cys
	ENST00000485889.2:c.70C>T	ENST00000485889.2:p.Arg24Cys
	ENST00000492474.6:c.70C>T	ENST00000492474.6:p.Arg24Cys
	ENST00000536378.5:c.70C>T	ENST00000536378.5:p.Arg24Cys
	ENST00000539477.6:c.70C>T	ENST00000539477.6:p.Arg24Cys
	ENST00000616768.6:c.793C>T	ENST00000616768.6:p.Arg265Cys
	ENST00000673673.2:c.793C>T	ENST00000673673.2:p.Arg265Cys
	ENST00000673715.1:c.793C>T	ENST00000673715.1:p.Arg265Cys
	ENST00000673899.1:c.677+5409C>T
	ENST00000673990.2:c.-139-2802C>T
	ENST00000674019.1:c.70C>T	ENST00000674019.1:p.Arg24Cys
	ENST00000713802.1:c.694C>T	ENST00000713802.1:p.Arg232Cys

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
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Links

MLH1

Type	Database	ID	Link
Gene	MIM	120436	OMIM
	HGNC	7127	HGNC
	Ensembl	ENSG00000076242	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM2985323	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic Likely pathogenic	2023-09-08	criteria provided, multiple submitters, no conflicts	Colorectal cancer, hereditary nonpolyposis, type 2	germline unknown	Detail
Pathogenic	2023-05-30	criteria provided, multiple submitters, no conflicts	not provided	germline unknown	Detail
Pathogenic	2013-09-05	reviewed by expert panel	Lynch syndrome	germline	Detail
Pathogenic	2022-01-01	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2024-01-09	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
Pathogenic	2018-02-10	criteria provided, single submitter	Carcinoma of colon	germline unknown	Detail
Pathogenic		no assertion criteria provided	Lynch syndrome 1	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.440	Hereditary Non-Polyposis Colon Cancer Type 2	NA	CLINVAR		Detail
0.329	Hereditary Nonpolyposis Colorectal Cancer	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Colorectal cancer, hereditary nonpolyposis, type 2	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND not provided	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Lynch syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Carcinoma of colon	ClinVar	Detail
NM_000249.4(MLH1):c.793C>T (p.Arg265Cys) AND Lynch syndrome 1	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs63751194 dbSNP
Genome: hg38
Position: chr3:37,017,508-37,017,508
Variant Type: snv
Reference Allele: C
Alternative Allele: T

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