chr2:62225526:C>T Detail (hg38)

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Information

Genome

Assembly	Position
hg19	chr2:62,452,661-62,452,661 View the variant detail on this assembly version.
hg38	chr2:62,225,526-62,225,526

[No Data.]

Summary

Links

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

[No Data.]

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.123	rheumatoid arthritis	[Our study identified nine loci newly associated with rheumatoid arthritis at a ...	GAD	22446963	Detail
0.129	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.006	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.248	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.123	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
<0.001	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.168	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.243	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.243	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.243	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail
0.123	rheumatoid arthritis	Genetic factors regarded as putative risk factors were RA-susceptible polymorphi...	BeFree	23577190	Detail

Annotation

Descrption	Source	Links
[Our study identified nine loci newly associated with rheumatoid arthritis at a threshold of P < 5.0...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail
Genetic factors regarded as putative risk factors were RA-susceptible polymorphisms identified by th...	DisGeNET	Detail

Gene: -
dbSNP: rs11900673 dbSNP
Genome: hg38
Position: chr2:62,225,526-62,225,526
Variant Type: snv
Reference Allele: C
Alternative Allele: T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): rs11900673
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 0.2861
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 4795
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 16760

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