chr2:220589153:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr2:221,453,874-221,453,874 View the variant detail on this assembly version. |
| hg38 | chr2:220,589,153-220,589,153 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.064 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Autoimmune Diseases | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| 0.010 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| <0.001 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| 0.001 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| <0.001 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| 0.002 | Autoimmune Diseases | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| <0.001 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| <0.001 | multiple sclerosis | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
| <0.001 | Autoimmune Diseases | Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7... | BeFree | 22194214 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
| Replication extended to the following polymorphisms: PKN2 (rs305217), GTF2B (rs7538427), EPHA4 (rs15... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs1517440 dbSNP
- Genome
- hg38
- Position
- chr2:220,589,153-220,589,153
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs1517440
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0637
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 1068
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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