chr19:53788578:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr19:54,291,832-54,291,832 View the variant detail on this assembly version. |
| hg38 | chr19:53,788,578-53,788,578 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.046 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.002 | breast carcinoma | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| 0.001 | breast carcinoma | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| 0.002 | Malignant neoplasm of breast | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| <0.001 | Malignant neoplasm of breast | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| 0.008 | Malignant neoplasm of breast | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| 0.001 | Malignant neoplasm of breast | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| 0.004 | breast carcinoma | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
| <0.001 | breast carcinoma | However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-37... | BeFree | 23982873 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
| However, for the miR-146a rs2910164 (G>C), miR-149 rs2292832 (G>T), miR-373 rs12983273 (C>T... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs12983273 dbSNP
- Genome
- hg38
- Position
- chr19:53,788,578-53,788,578
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs12983273
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0461
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 773
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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