chr14:64269942:G>C Detail (hg38) (ESR2)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr14:64,736,660-64,736,660 View the variant detail on this assembly version. |
| hg38 | chr14:64,269,942-64,269,942 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_001271877.1:c.536-1031C>G | |
| NM_001437.2:c.536-1031C>G | ||
| NM_001040275.1:c.536-1031C>G |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.222 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | HIV Infections | To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen recept... | BeFree | 22011627 | Detail |
| 0.003 | Metabolic syndrome X | To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen recept... | BeFree | 22011627 | Detail |
| 0.007 | Metabolic syndrome X | To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen recept... | BeFree | 22011627 | Detail |
| <0.001 | HIV Infections | To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen recept... | BeFree | 22011627 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen receptor-α (ERα) (ESR1, rs... | DisGeNET | Detail |
| To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen receptor-α (ERα) (ESR1, rs... | DisGeNET | Detail |
| To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen receptor-α (ERα) (ESR1, rs... | DisGeNET | Detail |
| To investigate genetic single nucleotide polymorphisms (SNPs) in estrogen receptor-α (ERα) (ESR1, rs... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs7154455 dbSNP
- Genome
- hg38
- Position
- chr14:64,269,942-64,269,942
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs7154455
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.2217
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 3716
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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